View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4789-Insertion-2 (Length: 780)

Name: NF4789-Insertion-2
Description: NF4789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4789-Insertion-2
NF4789-Insertion-2
[»] chr2 (6 HSPs)
chr2 (227-780)||(17607896-17608450)
chr2 (8-196)||(17607676-17607865)
chr2 (8-62)||(1206460-1206514)
chr2 (8-62)||(45701187-45701241)
chr2 (8-61)||(3376158-3376211)
chr2 (8-61)||(42184117-42184170)
[»] chr7 (9 HSPs)
chr7 (11-62)||(42453665-42453716)
chr7 (8-61)||(22681441-22681494)
chr7 (8-61)||(41242163-41242216)
chr7 (8-62)||(6459118-6459172)
chr7 (11-61)||(7566944-7566994)
chr7 (8-62)||(21120609-21120663)
chr7 (8-62)||(32215579-32215633)
chr7 (8-61)||(20398889-20398942)
chr7 (8-61)||(38889949-38890002)
[»] chr3 (5 HSPs)
chr3 (15-62)||(7676769-7676816)
chr3 (11-62)||(7638884-7638935)
chr3 (10-61)||(30188581-30188632)
chr3 (8-62)||(21477740-21477794)
chr3 (8-61)||(10773261-10773314)
[»] chr4 (9 HSPs)
chr4 (5-61)||(46191195-46191251)
chr4 (8-62)||(13159698-13159752)
chr4 (8-62)||(44546652-44546706)
chr4 (8-62)||(17186294-17186348)
chr4 (8-61)||(24010522-24010575)
chr4 (8-62)||(135820-135873)
chr4 (8-61)||(39868349-39868402)
chr4 (8-61)||(42396697-42396750)
chr4 (16-61)||(52762961-52763006)
[»] scaffold1251 (1 HSPs)
scaffold1251 (8-58)||(861-911)
[»] chr6 (5 HSPs)
chr6 (8-62)||(25186762-25186816)
chr6 (8-62)||(4103082-4103136)
chr6 (8-62)||(18489760-18489814)
chr6 (8-62)||(16477625-16477680)
chr6 (8-62)||(5675490-5675544)
[»] chr5 (8 HSPs)
chr5 (8-61)||(26397286-26397339)
chr5 (8-61)||(23257189-23257242)
chr5 (8-61)||(37268357-37268410)
chr5 (8-62)||(21825230-21825285)
chr5 (11-62)||(40632647-40632698)
chr5 (8-62)||(17945874-17945928)
chr5 (8-61)||(1585494-1585547)
chr5 (8-61)||(13390352-13390405)
[»] chr8 (3 HSPs)
chr8 (8-62)||(17936366-17936420)
chr8 (7-62)||(15172838-15172893)
chr8 (8-62)||(29934719-29934773)
[»] chr1 (4 HSPs)
chr1 (8-62)||(20819602-20819656)
chr1 (8-61)||(10349561-10349614)
chr1 (15-62)||(24509316-24509363)
chr1 (8-62)||(7637637-7637691)
[»] scaffold0267 (1 HSPs)
scaffold0267 (8-61)||(11007-11060)


Alignment Details
Target: chr2 (Bit Score: 376; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 227 - 780
Target Start/End: Original strand, 17607896 - 17608450
Alignment:
Q  227 cttgatggtgatggaaacatcaaaattatgcttgaaaagaaaaaccagccatattgannnnnnnnnnnnnngacaagtcaaataaatagnnnnnnntgga 326  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||              ||||||||||||||||||       ||||    
T  17607896 cttgatggtgatggaaacatcaaaattatgcttgaaaagaaaaaccagccatattgatttttattttttttgacaagtcaaataaatagaaaaaaatgga 17607995  T
Q  327 aagtgtattaattagtttatggtacgtatgttccttgaaaaaggtgaaagaattcaatcccatgttgttcatgaccttggattcatcgacattaaaaacc 426  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17607996 aagtgtattaattagtttatggtacgtatgttccttgaaaaaggtgaaagaattcaatcccatgttgttcatgaccttggattcatcgacattaaaaacc 17608095  T
Q  427 ataggattgtgttccaagctacaaggaccaaaccaaccatcattcaacacttgtctcacacatagctccttacccttcatatgtgtatgnnnnnnnnaga 526  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||    
T  17608096 ataggattgtgttccaagctacaaggaccaaaccaaccatcattcaacacttgtctcacacatagctccttacccttcatatgtgtatgttttttttaga 17608195  T
Q  527 agggtcacgttcttctcttgnnnnnnngtcacaatcatttcaaactaaggaagagaaaagagagaaaagaggaggaaggggttttggattttgatatgga 626  Q
    ||||||||||||||||||||       ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  17608196 agggtcacgttcttctcttgtttttttgtcacaatcatttcaaattaaggaagagaaaagagagaaaagaggaggaaggggttttggattttggtatgga 17608295  T
Q  627 gaataatcacatggtgaaggaggaaatgctagatgaagaagaagtggtggaacatgatgagattagtccccttggtgatggtgaagatgacgaa-atgtc 725  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||     
T  17608296 gaataatcacatggtgaaggaggaaatggtagatgaagaagaagtggtggaacatgatgagattagtcccattggtgatggtgaagatgatgaagatgtt 17608395  T
Q  726 gtctccaccttcacca-ggaaagggtcgctgcccgctaataaattccttgagagtc 780  Q
    || |||||||| |||| ||||||||| |||| | ||||| |||||| |||||||||    
T  17608396 gtttccaccttaaccatggaaagggttgctg-ctgctaagaaattcattgagagtc 17608450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 8 - 196
Target Start/End: Original strand, 17607676 - 17607865
Alignment:
Q  8 ttgtgcggggtgaatcactgtccatttgagcaatatattccatttttatttgttcnnnnnnnnnnnn-tgattatcatagatatgaaaatattgtattta 106  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||              ||||||||||||||||||||||| ||||||||    
T  17607676 ttgtgcgaggtgaatcactgtccgtttgagcaatatattccatttttatttgttaaaaaaaaaaaatatgattatcatagatatgaaaatactgtattta 17607775  T
Q  107 accatgaattaagagagtctatgttttattagtgcctccattgtccaaaaataaagcttgtatctnnnnnnngaaacaagcagtacatgc 196  Q
    || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||    
T  17607776 actatgaattaagagaggctatgttttattagtgcctccattgtccaaaaataaagcttgtatctaaaaaaagaaacaagcagtacatgc 17607865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 1206460 - 1206514
Alignment:
Q  8 ttgtgcggggtgaatcactgtccatttgagcaatatattccatttttatttgttc 62  Q
    |||||||||||||||||   ||||||||||||||||||| |||||| ||||||||    
T  1206460 ttgtgcggggtgaatcatcttccatttgagcaatatatttcattttgatttgttc 1206514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 45701241 - 45701187
Alignment:
Q  8 ttgtgcggggtgaatcactgtccatttgagcaatatattccatttttatttgttc 62  Q
    |||||| |||||||||||| | | ||| |||||||||||||||||| ||||||||    
T  45701241 ttgtgctgggtgaatcacttttcttttaagcaatatattccattttgatttgttc 45701187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 3376158 - 3376211
Alignment:
Q  8 ttgtgcggggtgaatcactgtccatttgagcaatatattccatttttatttgtt 61  Q
    ||||||||||||||||||| | | |||||| ||||||||| ||||| |||||||    
T  3376158 ttgtgcggggtgaatcactcttcttttgagtaatatattctattttgatttgtt 3376211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 42184117 - 42184170
Alignment:
Q  8 ttgtgcggggtgaatcactgtccatttgagcaatatattccatttttatttgtt 61  Q
    |||||||||||||||||||||   |||||| ||||||||||||| | |||||||    
T  42184117 ttgtgcggggtgaatcactgttggtttgagtaatatattccattatgatttgtt 42184170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 42453665 - 42453716
Alignment:
Q  11 tgcggggtgaatcactgtccatttgagcaatatattccatttttatttgttc 62  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  42453665 tgcggggtgaatcactgttcgtttgagcaatatattccatttttatttgttc 42453716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 22681494 - 22681441
Alignment:
Q  8 ttgtgcggggtgaatcactgtccatttgagcaatatattccatttttatttgtt 61  Q
    ||||||||||||||||||| | | |||||||||||||||||||||| |||||||    
T  22681494 ttgtgcggggtgaatcactcttcttttgagcaatatattccattttgatttgtt 22681441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 41242216 - 41242163
Alignment:
Q  8 ttgtgcggggtgaatcactgtccatttgagcaatatattccatttttatttgtt 61  Q
    ||||||||||||||||||| | | |||||| ||||||||||||||| |||||||    
T  41242216 ttgtgcggggtgaatcacttttcgtttgagtaatatattccattttgatttgtt 41242163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 6459118 - 6459172
Alignment:
Q  8 ttgtgcggggtgaatcactgtccatttgagcaatatattccatttttatttgttc 62  Q
    |||||| |||||||||||| | | ||||||||||||||| |||||| ||||||||    
T  6459118 ttgtgcagggtgaatcacttttcttttgagcaatatatttcattttgatttgttc 6459172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 7566994 - 7566944
Alignment:
Q  11 tgcggggtgaatcactgtccatttgagcaatatattccatttttatttgtt 61  Q
    |||||||||||||| | | | |||||||||||||||||||||| |||||||    
T  7566994 tgcggggtgaatcatttttcctttgagcaatatattccattttgatttgtt 7566944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 21120609 - 21120663
Alignment:
Q  8 ttgtgcggggtgaatcactgtccatttgagcaatatattccatttttatttgttc 62  Q
    ||||||||| ||||||||  | | |||||||||||||||||||||| ||||||||    
T  21120609 ttgtgcgggatgaatcacactgcttttgagcaatatattccattttgatttgttc 21120663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 32215633 - 32215579
Alignment:
Q  8 ttgtgcggggtgaatcactgtccatttgagcaatatattccatttttatttgttc 62  Q
    ||||||||||||||||||| |   |||||| ||||||||||||||| ||||||||    
T  32215633 ttgtgcggggtgaatcactctgtttttgagtaatatattccattttgatttgttc 32215579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 20398889 - 20398942
Alignment:
Q  8 ttgtgcggggtgaatcactgtccatttgagcaatatattccatttttatttgtt 61  Q
    |||| |||||||||||||| | | ||||||||||||||| |||||| |||||||    
T  20398889 ttgtacggggtgaatcactctgcttttgagcaatatatttcattttgatttgtt 20398942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 38889949 - 38890002
Alignment:
Q  8 ttgtgcggggtgaatcactgtccatttgagcaatatattccatttttatttgtt 61  Q
    ||||||||||||||||||  | | |||||||||||||||| ||||| |||||||    
T  38889949 ttgtgcggggtgaatcacctttcttttgagcaatatattctattttaatttgtt 38890002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 62
Target Start/End: Complemental strand, 7676816 - 7676769
Alignment:
Q  15 gggtgaatcactgtccatttgagcaatatattccatttttatttgttc 62  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||    
T  7676816 gggtgattcactgtccatttgagcaatatattccatttttatttgttc 7676769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 7638935 - 7638884
Alignment:
Q  11 tgcggggtgaatcactgtccatttgagcaatatattccatttttatttgttc 62  Q
    |||||||||||||||| | | |||||| ||||||||||||||| ||||||||    
T  7638935 tgcggggtgaatcacttttcgtttgagtaatatattccattttgatttgttc 7638884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 61
Target Start/End: Original strand, 30188581 - 30188632
Alignment:
Q  10 gtgcggggtgaatcactgtccatttgagcaatatattccatttttatttgtt 61  Q
    ||||||||||||||||  | | |||||||||||||||| |||||||||||||    
T  30188581 gtgcggggtgaatcacctttcgtttgagcaatatattctatttttatttgtt 30188632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 21477794 - 21477740
Alignment:
Q  8 ttgtgcggggtgaatcactgtccatttgagcaatatattccatttttatttgttc 62  Q
    ||||||||||||||||||| |   |||||| ||||||||||||||| ||||||||    
T  21477794 ttgtgcggggtgaatcactctgtctttgagtaatatattccattttgatttgttc 21477740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 10773261 - 10773314
Alignment:
Q  8 ttgtgcggggtgaatcactgtccatttgagcaatatattccatttttatttgtt 61  Q
    ||||||||||||||||||  | | |||||||||||||| ||||||| |||||||    
T  10773261 ttgtgcggggtgaatcacctttcttttgagcaatatatcccattttgatttgtt 10773314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 46191251 - 46191195
Alignment:
Q  5 acattgtgcggggtgaatcactgtccatttgagcaatatattccatttttatttgtt 61  Q
    |||||||||||||||||||||| | | |||||||||||||||||||||| |||||||    
T  46191251 acattgtgcggggtgaatcacttttcgtttgagcaatatattccattttgatttgtt 46191195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 13159752 - 13159698
Alignment:
Q  8 ttgtgcggggtgaatcactgtccatttgagcaatatattccatttttatttgttc 62  Q
    ||||||||||||||||||| | | |||||||||||||||||||||| ||||||||    
T  13159752 ttgtgcggggtgaatcacttttcgtttgagcaatatattccattttgatttgttc 13159698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 44546652 - 44546706
Alignment:
Q  8 ttgtgcggggtgaatcactgtccatttgagcaatatattccatttttatttgttc 62  Q
    ||||||||||||||||||| | | |||||||||||||||||||||| ||||||||    
T  44546652 ttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgttc 44546706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 17186294 - 17186348
Alignment:
Q  8 ttgtgcggggtgaatcactgtccatttgagcaatatattccatttttatttgttc 62  Q
    ||||||||| ||||||||| | | |||||||||||||||||||||| ||||||||    
T  17186294 ttgtgcgggatgaatcactcttcttttgagcaatatattccattttgatttgttc 17186348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 24010522 - 24010575
Alignment:
Q  8 ttgtgcggggtgaatcactgtccatttgagcaatatattccatttttatttgtt 61  Q
    ||||||||||||||||||| | ||||||| |||||||||| ||||| |||||||    
T  24010522 ttgtgcggggtgaatcactcttcatttgaacaatatattcaattttgatttgtt 24010575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 135873 - 135820
Alignment:
Q  8 ttgtgcggggtgaatcactgtccatttgagcaatatattccatttttatttgttc 62  Q
    |||| |||||||||||||| ||  |||||||||||||||||||||| ||||||||    
T  135873 ttgtacggggtgaatcactttcg-tttgagcaatatattccattttgatttgttc 135820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 39868349 - 39868402
Alignment:
Q  8 ttgtgcggggtgaatcactgtccatttgagcaatatattccatttttatttgtt 61  Q
    ||||||||||||| ||||| | | ||| |||||||||||||||||| |||||||    
T  39868349 ttgtgcggggtgagtcactcttcttttcagcaatatattccattttgatttgtt 39868402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 42396750 - 42396697
Alignment:
Q  8 ttgtgcggggtgaatcactgtccatttgagcaatatattccatttttatttgtt 61  Q
    ||||||||||| ||||||  | | |||||||||||||||||||||| |||||||    
T  42396750 ttgtgcggggtaaatcacctttcttttgagcaatatattccattttaatttgtt 42396697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 52762961 - 52763006
Alignment:
Q  16 ggtgaatcactgtccatttgagcaatatattccatttttatttgtt 61  Q
    ||||||||||| | | |||||||||||||||||||||| |||||||    
T  52762961 ggtgaatcactatacttttgagcaatatattccattttaatttgtt 52763006  T

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Target: scaffold1251 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold1251
Description:

Target: scaffold1251; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 911 - 861
Alignment:
Q  8 ttgtgcggggtgaatcactgtccatttgagcaatatattccatttttattt 58  Q
    ||||||||||||||||||| | |||||||||||||||||||||||| ||||    
T  911 ttgtgcggggtgaatcacttttcatttgagcaatatattccattttgattt 861  T

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Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 25186816 - 25186762
Alignment:
Q  8 ttgtgcggggtgaatcactgtccatttgagcaatatattccatttttatttgttc 62  Q
    ||||||||||||||| ||||  | |||||||||||||||||||||||||||||||    
T  25186816 ttgtgcggggtgaattactgatcgtttgagcaatatattccatttttatttgttc 25186762  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 4103136 - 4103082
Alignment:
Q  8 ttgtgcggggtgaatcactgtccatttgagcaatatattccatttttatttgttc 62  Q
    ||||||||||||||||||| ||  |||||||||||||||||||||| | ||||||    
T  4103136 ttgtgcggggtgaatcactttcattttgagcaatatattccattttgacttgttc 4103082  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 18489760 - 18489814
Alignment:
Q  8 ttgtgcggggtgaatcactgtccatttgagcaatatattccatttttatttgttc 62  Q
    ||||||||||||||||||  | | |||||||||||||||||||||| ||||||||    
T  18489760 ttgtgcggggtgaatcacctttcttttgagcaatatattccattttgatttgttc 18489814  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 16477680 - 16477625
Alignment:
Q  8 ttgtgcggggtgaatcac-tgtccatttgagcaatatattccatttttatttgttc 62  Q
    |||||||||||||||||| | | | |||||||||||||||||||||| ||||||||    
T  16477680 ttgtgcggggtgaatcaccttttcttttgagcaatatattccattttgatttgttc 16477625  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 5675544 - 5675490
Alignment:
Q  8 ttgtgcggggtgaatcactgtccatttgagcaatatattccatttttatttgttc 62  Q
    |||||||||||||||||||   | |||| ||||||||||||||||| ||||||||    
T  5675544 ttgtgcggggtgaatcacttctcttttgtgcaatatattccattttgatttgttc 5675490  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000005; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 26397339 - 26397286
Alignment:
Q  8 ttgtgcggggtgaatcactgtccatttgagcaatatattccatttttatttgtt 61  Q
    ||||||||||||||||||| | | |||||||||||||||||||||| |||||||    
T  26397339 ttgtgcggggtgaatcactcttcttttgagcaatatattccattttgatttgtt 26397286  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 23257189 - 23257242
Alignment:
Q  8 ttgtgcggggtgaatcactgtccatttgagcaatatattccatttttatttgtt 61  Q
    ||||||||||||||||||| | | ||||| |||||||||||||||| |||||||    
T  23257189 ttgtgcggggtgaatcacttttcgtttgaacaatatattccattttgatttgtt 23257242  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 37268357 - 37268410
Alignment:
Q  8 ttgtgcggggtgaatcactgtccatttgagcaatatattccatttttatttgtt 61  Q
    |||| |||||||||||||| | | |||||||||||||||||||||| |||||||    
T  37268357 ttgtacggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 37268410  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 21825230 - 21825285
Alignment:
Q  8 ttgtgcggggtgaatcac-tgtccatttgagcaatatattccatttttatttgttc 62  Q
    |||||||||||||||||| | | | |||||||||||||||||||||| ||||||||    
T  21825230 ttgtgcggggtgaatcaccttttcttttgagcaatatattccattttgatttgttc 21825285  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 40632698 - 40632647
Alignment:
Q  11 tgcggggtgaatcactgtccatttgagcaatatattccatttttatttgttc 62  Q
    |||||||||||||||| | | ||||||||||||||| |||||| ||||||||    
T  40632698 tgcggggtgaatcactcttcttttgagcaatatatttcattttgatttgttc 40632647  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 17945928 - 17945874
Alignment:
Q  8 ttgtgcggggtgaatcactgtccatttgagcaatatattccatttttatttgttc 62  Q
    ||||||||||||||||||| |   |||||| ||||||||||||||| ||||||||    
T  17945928 ttgtgcggggtgaatcactctgtttttgagtaatatattccattttgatttgttc 17945874  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 1585494 - 1585547
Alignment:
Q  8 ttgtgcggggtgaatcactgtccatttgagcaatatattccatttttatttgtt 61  Q
    |||| |||||||||||||| | | |||||||||||||||| ||||| |||||||    
T  1585494 ttgtacggggtgaatcactctgcttttgagcaatatattcaattttgatttgtt 1585547  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 13390405 - 13390352
Alignment:
Q  8 ttgtgcggggtgaatcactgtccatttgagcaatatattccatttttatttgtt 61  Q
    |||||||||||||||||||   | ||||||| |||||||||||||| |||||||    
T  13390405 ttgtgcggggtgaatcacttctcttttgagctatatattccattttgatttgtt 13390352  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 17936366 - 17936420
Alignment:
Q  8 ttgtgcggggtgaatcactgtccatttgagcaatatattccatttttatttgttc 62  Q
    ||||||||||||||||||| | | ||||||||||||||| |||||| ||||||||    
T  17936366 ttgtgcggggtgaatcacttttcctttgagcaatatatttcattttgatttgttc 17936420  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 15172838 - 15172893
Alignment:
Q  7 attgtgcggggtgaatcactgtccatttgagcaatatattccatttttatttgttc 62  Q
    ||||| |||||||||||||| | | |||||| ||||||||||||||| ||||||||    
T  15172838 attgttcggggtgaatcactcttcgtttgagaaatatattccattttaatttgttc 15172893  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 29934719 - 29934773
Alignment:
Q  8 ttgtgcggggtgaatcactgtccatttgagcaatatattccatttttatttgttc 62  Q
    ||||||||||||||||||    | |||||||||||||||||||||| ||||||||    
T  29934719 ttgtgcggggtgaatcacctctcttttgagcaatatattccattttgatttgttc 29934773  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 20819656 - 20819602
Alignment:
Q  8 ttgtgcggggtgaatcactgtccatttgagcaatatattccatttttatttgttc 62  Q
    |||||| |||||||||||| | | |||||||||||||||||||||| ||||||||    
T  20819656 ttgtgctgggtgaatcacttttcttttgagcaatatattccattttgatttgttc 20819602  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 10349561 - 10349614
Alignment:
Q  8 ttgtgcggggtgaatcactgtccatttgagcaatatattccatttttatttgtt 61  Q
    |||||| |||||||||||| ||  |||||||||||||||||||||| |||||||    
T  10349561 ttgtgcagggtgaatcactttcagtttgagcaatatattccattttgatttgtt 10349614  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 62
Target Start/End: Complemental strand, 24509363 - 24509316
Alignment:
Q  15 gggtgaatcactgtccatttgagcaatatattccatttttatttgttc 62  Q
    |||||||||||| | | |||||||||||||||||||||| ||||||||    
T  24509363 gggtgaatcactcttcttttgagcaatatattccattttgatttgttc 24509316  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 7637691 - 7637637
Alignment:
Q  8 ttgtgcggggtgaatcactgtccatttgagcaatatattccatttttatttgttc 62  Q
    ||||||||||||||||||  | | |||||||||||||| ||||||| ||||||||    
T  7637691 ttgtgcggggtgaatcacctttcttttgagcaatatatcccattttgatttgttc 7637637  T

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Target: scaffold0267 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 11007 - 11060
Alignment:
Q  8 ttgtgcggggtgaatcactgtccatttgagcaatatattccatttttatttgtt 61  Q
    ||||||||||||||||||| ||  |||||| ||||||||||||||| |||||||    
T  11007 ttgtgcggggtgaatcactctctttttgagtaatatattccattttgatttgtt 11060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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