View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4789-Insertion-3 (Length: 650)
Name: NF4789-Insertion-3
Description: NF4789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4789-Insertion-3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 547; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 6 - 650
Target Start/End: Complemental strand, 48896328 - 48895701
Alignment:
| Q |
6 |
caagatccctccatcacattctctcaagattgttttctcgaaatgtcaggtagcaaaattaacaatcattagaattcaaatgaaactctttcagataaat |
105 |
Q |
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| T |
48896328 |
caagatccctccatcacattctctcaagattgttttctcgaaatgtcaggtagcaaaattaacaatcattaaaattcaaatgaaactctttcagataaat |
48896229 |
T |
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| Q |
106 |
tatttattgactctctctttactgttttgacaaagctttcaaatatgaaggtttgccattggtgtcacttggattgttgggtccattaccatnnnnnnng |
205 |
Q |
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| T |
48896228 |
tatttattgactctctctttactgttttgacaaagctttcaaatatgaaggtttgccattggtgtcacttggattgttgggtccattaccataaaaaaag |
48896129 |
T |
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| Q |
206 |
aagtaagattaattctcttgaagtttagaacattacataatcaaatttcatgtatgataaaattccatcatcaatttcctcgttcaaaaagctcaagagt |
305 |
Q |
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| T |
48896128 |
aagtaagatcaattcttttgaagtttagaacattacataatcaaatttcatgtatgataaaattccatcatcaatttcctctttcaaaaagctcaagagt |
48896029 |
T |
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| Q |
306 |
cttgttttgactgataatgtttttaatggaagtgtacataatctcaaaagattagactctcttgaacaaattaattttagttgcactaaattatgccctg |
405 |
Q |
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| T |
48896028 |
cttgttttgactgataatgtttttaatggaagtgtacataa----------------tctcttgaacaaattaattttagttgcactaaattatgccctg |
48895945 |
T |
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| Q |
406 |
aatcccgttcaaaagagaactatcttgtgagtattatcttgagaaatatctcgttgagaactcaaattcctcaccaactcatgcattttgaaaacattcc |
505 |
Q |
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| T |
48895944 |
aatcccgttcaaaagagaactatcttgtgagtattatcttgagaaatatctcgttgagaactcaaattcctcaccaactcatgcattttgaaaacattcc |
48895845 |
T |
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| Q |
506 |
atcatttctattctctctttctttcctacaactcctaatagctacgatcattctcataatacccattctgctaacaggggcaaacacttgagtataattt |
605 |
Q |
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| T |
48895844 |
atcatttctattctctctttctttcctacaactcctaatagctacgatcattctcataatacccattctgctaacaggggcaaacacttgagtataa-tt |
48895746 |
T |
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| Q |
606 |
tactccatgctcctatttctgcatgctcatgacttgcaactttta |
650 |
Q |
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| T |
48895745 |
tactccatgctcctatttctgcatgctcatgacttgcaactttta |
48895701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 2e-29; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 88 - 380
Target Start/End: Complemental strand, 16963862 - 16963573
Alignment:
| Q |
88 |
aaactctttcagataaattatttattgactctctctttactgttttgacaaagctttcaaatatgaaggttt-gccattggtgtcacttggattgttggg |
186 |
Q |
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| T |
16963862 |
aaactctttctgaaagattttctattgattctttttttactgttgtgacaaagctttcaaagatgaaggttttgtcattggtttcacttggtttgtgggg |
16963763 |
T |
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| Q |
187 |
tccattaccatnnnnnnngaagtaagattaattctcttgaagtttagaacattacataatcaaatttcatgtatgataaaattccatcatcaatttcctc |
286 |
Q |
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| T |
16963762 |
tccactaccttccaagatta-gtaggtttaagtcacttgaagttttcaacatttcat---caaatttcttgtatggaaaaattccatcatcagtttcttc |
16963667 |
T |
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| Q |
287 |
gttcaaaaagctcaagagtcttgttttgactgataatgtttttaatggaagtgtacataatctcaaaagattagactctcttgaacaaattaat |
380 |
Q |
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| T |
16963666 |
aatgaaaagtcttaagagtcttgttttggctgataattttttcaatggaagtgttcctaatctcaaaagattaacctctcttgaagagattaat |
16963573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 245 - 371
Target Start/End: Complemental strand, 16216453 - 16216327
Alignment:
| Q |
245 |
atcaaatttcatgtatgataaaattccatcatcaatttcctcgttcaaaaagctcaagagtcttgttttgactgataatgtttttaatggaagtgtacat |
344 |
Q |
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| T |
16216453 |
atcaaatttcttgtatggaaaaattccattatcagtttcttcaatgaaaaatctcaagagtcttgttttggctgataattttttcaatggaagtgttcct |
16216354 |
T |
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| Q |
345 |
aatctcaaaagattagactctcttgaa |
371 |
Q |
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| T |
16216353 |
aatctcaaaagattaacctctcttgaa |
16216327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 126 - 195
Target Start/End: Complemental strand, 16216568 - 16216498
Alignment:
| Q |
126 |
actgttttgacaaagctttcaaatatgaagg-tttgccattggtgtcacttggattgttgggtccattacc |
195 |
Q |
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| T |
16216568 |
actgttttgacaaaactttcaaacatgaaggttttgtcattggttttacttggtttgtggggtccactacc |
16216498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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