View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4789-Insertion-4 (Length: 668)
Name: NF4789-Insertion-4
Description: NF4789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4789-Insertion-4 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 522; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 111 - 668
Target Start/End: Complemental strand, 3503125 - 3502569
Alignment:
| Q |
111 |
tttctatgagtaagtatttgtaatttggtttacttgcctttttgtattttggacttgatgtttctttgaagttttgattcgattgtgatattgaggtatt |
210 |
Q |
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| T |
3503125 |
tttctatgagtaagtatttgtaatttggtttacttgcctttttgtattttggacttgatgtttctttgaagttttgattcgattgtgatattgaggtatt |
3503026 |
T |
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| Q |
211 |
gaatcaatgtttgattgtatttcaggattgtattttttggaatgtttattggaatcgctgaatactgaaagggacatatctgataatttcaaaattgatt |
310 |
Q |
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| T |
3503025 |
gaatcaatgtttgattgtatttcaggattgtattttttggaatgtttattggaatcactgaatactcaaagagacatatctgataatttcaaaattgatt |
3502926 |
T |
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| Q |
311 |
ctttacgagggaatttgaaatcttatcctcaagacatttgcatcttaaggtgatcaagaatttcttcaaagttcatacgagaatttgcttctatcagaga |
410 |
Q |
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| T |
3502925 |
ctttacgagggaatttgaaatcttatcctcaagacatttgcatcttaaggtgattaagaatttcttcaaagttcatacgagaatttgcttctatcagaga |
3502826 |
T |
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| Q |
411 |
tgataattggttcaaatactttgtattgaattcctgaccagatgatccaaagctattcttcaaatcatacaaattgaccatcagacgaagcaacaactat |
510 |
Q |
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| T |
3502825 |
ggataattggttcaaatactttgtattgaattcctgaccagatgatccaaagctattcttcaaatcatacaaattgaccatcagacgaagcaacaactat |
3502726 |
T |
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| Q |
511 |
caagcgaaatgatagaaataagacaaagtgacattacacttcttcggtctagcagaattgttttcaattcagatcggacaattctatacttatttggtgc |
610 |
Q |
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| T |
3502725 |
caagcgaaatgatagaaataagacaaagtgacattacacttcttcggtctagcagaattgttttcaattcagatcagacaaatctatacttatttggtgc |
3502626 |
T |
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| Q |
611 |
aaatgaattgttttctatttagattatgcttttgttcccttctaaatgaaatggctta |
668 |
Q |
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| T |
3502625 |
aaatgaattgttttctatttagattatgcttttgtt-ccttctaaatgaaatggctta |
3502569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 8 - 116
Target Start/End: Complemental strand, 3509027 - 3508919
Alignment:
| Q |
8 |
tatcagaggataaaatccgagatcagagggttatttctttgatctgcatatggtgatatttactaatcctgcctgtcttttgccgatctgcatgtgatga |
107 |
Q |
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| T |
3509027 |
tatcagaggataaaatccgagatcagagggttatttctttgatatgcatatggtgatatttactaatcctgcctgtcttttgccgatttgcatgtgatga |
3508928 |
T |
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| Q |
108 |
tattttcta |
116 |
Q |
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| T |
3508927 |
tattttcta |
3508919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 213
Target Start/End: Original strand, 47178065 - 47178154
Alignment:
| Q |
125 |
tatttgtaatttggttt-acttgcctttttgtattttggacttgatgtttctttgaagttttgattcgattgtgatattgaggtattgaa |
213 |
Q |
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| T |
47178065 |
tatttgaaatttgggttcacttgactctttgtaatttggagtcgatgtttctttgaagttttaatttgcttgtgatatcgaagtattgaa |
47178154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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