View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4789-Insertion-6 (Length: 586)
Name: NF4789-Insertion-6
Description: NF4789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4789-Insertion-6 |
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Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 7 - 493
Target Start/End: Original strand, 48617232 - 48617706
Alignment:
| Q |
7 |
agattaaattactgcaacgcatttgacaagctggacgccgcgtgagtttagtttccaactttctttaacgtttggataacataaggacaaacacaaatct |
106 |
Q |
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| T |
48617232 |
agattaaattactgcaacgcatttgacaagctggacgccgcgtgagtttaggttccaactttctataacgtttggataacataaggacaaacacaaatct |
48617331 |
T |
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| Q |
107 |
ttt-------attaatgaccataacatgttagaaataactaaactacatttttagtaaaacataaaggaaaataatatttgagcnnnnnnntaaaatagt |
199 |
Q |
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| T |
48617332 |
ttttaaaaatattaatgaccataacatgttagaaataactaaactacatttttagtaaaacataaaggaaaataatatttgagcaaaaaaataaaataat |
48617431 |
T |
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| Q |
200 |
ttaaagatcttattacaagttttttaattcagtctaaaaaacttttttaattcatagatctattcaaatatttataaatagtttaacaaagacctacaaa |
299 |
Q |
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| T |
48617432 |
ttaaagatcttattacaacttttttaattcagtctaaaaaactttttt---------------tcaaatatttataaatagttcaacaaagacctacaaa |
48617516 |
T |
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| Q |
300 |
ttaataactagattatttcacaccataccatatgaaaggtgcaaaatgctgatcgtggtcttcaactttatgtgacaacaaacaaaacttgcctttgtct |
399 |
Q |
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| T |
48617517 |
ttaataactagattatttcacaccataccatatgaaaggtgcaaaatgctgatcgtggtcttcaactttatgtgacaacaaacaaaacttgcctt----t |
48617612 |
T |
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| Q |
400 |
gtatacagtttattacttagatcaacgattgtttaattattgtttctatattcccctgctaccactactatataaattaaagcccattgtgaag |
493 |
Q |
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| T |
48617613 |
gtatacggtttattacttagatcaacgattgtttaattattgtttctatattcccctgctaccactactatataaattaaagcccattgtgaag |
48617706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 530 - 567
Target Start/End: Original strand, 48617743 - 48617780
Alignment:
| Q |
530 |
tgggatccgaagcaaacactcatatacttcttctctct |
567 |
Q |
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| T |
48617743 |
tgggatccgaagcaaacactcatatccttcttatctct |
48617780 |
T |
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