View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4789-Insertion-7 (Length: 493)

Name: NF4789-Insertion-7
Description: NF4789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4789-Insertion-7
NF4789-Insertion-7
[»] chr2 (4 HSPs)
chr2 (7-493)||(11811108-11811594)
chr2 (13-493)||(11803370-11803850)
chr2 (293-438)||(11933665-11933810)
chr2 (293-438)||(11946886-11947031)
[»] chr4 (7 HSPs)
chr4 (212-345)||(37954139-37954272)
chr4 (212-339)||(38061844-38061971)
chr4 (227-267)||(38145746-38145786)
chr4 (212-267)||(38125623-38125678)
chr4 (212-267)||(38129576-38129631)
chr4 (389-435)||(38090621-38090667)
chr4 (215-267)||(38086393-38086445)


Alignment Details
Target: chr2 (Bit Score: 439; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 7 - 493
Target Start/End: Original strand, 11811108 - 11811594
Alignment:
Q  7 aacagttacagtttttccactatcagaagatgaattagcagctattcccaaaactgagtgaagaaaaagttcactaggaagcttgtttgctataatttgc 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11811108 aacagttacagtttttccactatcagaagatgaattagcagctattcccaaaactgagtgaagaaaaagttcactaggaagcttgtttgctataatttgc 11811207  T
Q  107 catttcatgaaaagggtagtagcattttgatctaatctatttggaatatcgaaaattgtcactattgaaggaacgcgtacaagcttgactttccatgcag 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||    
T  11811208 catttcatgaaaagggtagtagcattttgatctaatctatttggaatatcgaaaattgtcactattaaagggacacgtacaagcttgactttccatgcag 11811307  T
Q  207 taatcactccaaagcttgatcctccacctcctcttatagcccaaaatagatcctcacccatcatttctctatttagaatgtttccgttaacatctaatat 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| | |||    
T  11811308 taatcactccaaagcttgatcctccacctcctcttatagcccaaaataaatcttcacccatcatttctctatttagaatgtttccgttaacatcgattat 11811407  T
Q  307 ttgagcatcaattatattatcagttgcaagaccatattttctaaatatggtaccaaatccacctctgctgaagtgacctccgacaccaacagtaggacaa 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  11811408 ttgagcatcaattatattatcagttgcaagaccatattttctaaatatggtaccaaatccacctccgctgaagtgacctccgacaccgacagtaggacaa 11811507  T
Q  407 ctaccagctggaaaaccatgaacattacttttattttcaattgcatagtagagttctccaagagtagcacctgcttgaacccatgca 493  Q
    ||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11811508 ctacctgctggaaaaccatgaagattacttttatttgcaattgcatagtagagttctccaagagtagcacctgcttgaacccatgca 11811594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 13 - 493
Target Start/End: Original strand, 11803370 - 11803850
Alignment:
Q  13 tacagtttttccactatcagaagatgaattagcagctattcccaaaactgagtgaagaaaaagttcactaggaagcttgtttgctataatttgccatttc 112  Q
    |||||||||||||| ||||||||||||||||||||||| ||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  11803370 tacagtttttccaccatcagaagatgaattagcagctagtcctataactgagtgcagaaaaagttcactaggaagcttgtttgctataatttgccatttc 11803469  T
Q  113 atgaaaagggtagtagcattttgatctaatctatttggaatatcgaaaattgtcactattgaaggaacgcgtacaagcttgactttccatgcagtaatca 212  Q
    |||||||||||||||||||||| | |||| || |||||||||| ||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  11803470 atgaaaagggtagtagcattttcacctaaactctttggaatattgaaaactgtcactattgaaggaacttgtacaagcttgactttccatgcagtaatca 11803569  T
Q  213 ctccaaagcttgatcctccacctcctcttatagcccaaaatagatcctcacccatcatttctctatttagaatgtttccgttaacatctaatatttgagc 312  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||| || ||||| ||||||||||  ||||||||    
T  11803570 ctccaaagcttgaccctccacctcctcttatagcccaaaatagatcctcacccatcaattttctatttaggatctttccattaacatctaccatttgagc 11803669  T
Q  313 atcaattatattatcagttgcaagaccatattttctaaatatggtaccaaatccacctctgctgaagtgacctccgacaccaacagtaggacaactacca 412  Q
    |||||||| |||||||| |||||||||||||||||||||||  ||||||||||||||||  |||||||||||||| ||||||||||||||||||||||||    
T  11803670 atcaattacattatcagctgcaagaccatattttctaaataatgtaccaaatccacctccactgaagtgacctcctacaccaacagtaggacaactacca 11803769  T
Q  413 gctggaaaaccatgaacattacttttattttcaattgcatagtagagttctccaagagtagcacctgcttgaacccatgca 493  Q
    |||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11803770 gctggaaatccatgaacgttacttttatttgcaattgcatagtagagttctccaagagtagcacctgcttgaacccatgca 11803850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 293 - 438
Target Start/End: Complemental strand, 11933810 - 11933665
Alignment:
Q  293 ttaacatctaatatttgagcatcaattatattatcagttgcaagaccatattttctaaatatggtaccaaatccacctctgctgaagtgacctccgacac 392  Q
    |||||||| | |||||| ||||| || |||||||||  || ||||||||||||||| |  ||| ||||| ||||||| |  || || || ||||| ||||    
T  11933810 ttaacatcgattatttgtgcatcgataatattatcaactgaaagaccatattttctcatcatgttaccatatccaccaccacttaaatgtcctccaacac 11933711  T
Q  393 caacagtaggacaactaccagctggaaaaccatgaacattactttt 438  Q
    |||| |||||||||   || || |||||||||||||| ||||||||    
T  11933710 caacggtaggacaaacgccggccggaaaaccatgaactttactttt 11933665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 293 - 438
Target Start/End: Complemental strand, 11947031 - 11946886
Alignment:
Q  293 ttaacatctaatatttgagcatcaattatattatcagttgcaagaccatattttctaaatatggtaccaaatccacctctgctgaagtgacctccgacac 392  Q
    |||||||| | |||||| ||||| || |||||||||  || ||||||||||||||| |  ||| ||||| ||||||| |  || || || ||||| ||||    
T  11947031 ttaacatcgattatttgtgcatcgataatattatcaactgaaagaccatattttctcatcatgttaccatatccaccaccacttaaatgtcctccaacac 11946932  T
Q  393 caacagtaggacaactaccagctggaaaaccatgaacattactttt 438  Q
    |||| |||||||||   || || |||||||||||||| ||||||||    
T  11946931 caacggtaggacaaacgccggccggaaaaccatgaactttactttt 11946886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 212 - 345
Target Start/End: Complemental strand, 37954272 - 37954139
Alignment:
Q  212 actccaaagcttgatcctccacctcctcttatagcccaaaatagatcctcacccatcatttctctatttagaatgtttccgttaacatctaatatttgag 311  Q
    ||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||  |||||| |  ||||   | || || ||||| | ||| ||||    
T  37954272 actccaaagcttgctcctccacctcctctaatagcccaaaacagatcctcacccatcgattctctgtcaagaaccctaccattcacatcaattatgtgag 37954173  T
Q  312 catcaattatattatcagttgcaagaccatattt 345  Q
    | |||| ||||||||||| || ||||||||||||    
T  37954172 cgtcaagtatattatcagctgaaagaccatattt 37954139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 212 - 339
Target Start/End: Original strand, 38061844 - 38061971
Alignment:
Q  212 actccaaagcttgatcctccacctcctcttatagcccaaaatagatcctcacccatcatttctctatttagaatgtttccgttaacatctaatatttgag 311  Q
    |||||||| |||| ||||||||||||||| ||||||||||| | ||||||||||||   |||||| |  ||||   | || || ||||| | ||| ||||    
T  38061844 actccaaaacttgctcctccacctcctctaatagcccaaaaaaaatcctcacccattgcttctctgtcaagaaacctacccttcacatcaattatgtgag 38061943  T
Q  312 catcaattatattatcagttgcaagacc 339  Q
    ||||||| |||||||||| |||||||||    
T  38061944 catcaataatattatcagctgcaagacc 38061971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 227 - 267
Target Start/End: Complemental strand, 38145786 - 38145746
Alignment:
Q  227 cctccacctcctcttatagcccaaaatagatcctcacccat 267  Q
    |||||||| |||||||||||||||||||||||||| |||||    
T  38145786 cctccaccacctcttatagcccaaaatagatcctctcccat 38145746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 267
Target Start/End: Complemental strand, 38125678 - 38125623
Alignment:
Q  212 actccaaagcttgatcctccacctcctcttatagcccaaaatagatcctcacccat 267  Q
    |||||||| |||| ||||||||||||||| ||||||||||| || || ||||||||    
T  38125678 actccaaaacttgctcctccacctcctctaatagcccaaaaaagttcttcacccat 38125623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 267
Target Start/End: Complemental strand, 38129631 - 38129576
Alignment:
Q  212 actccaaagcttgatcctccacctcctcttatagcccaaaatagatcctcacccat 267  Q
    |||||||| |||| ||||||||||||||| ||||||||||| ||||| || |||||    
T  38129631 actccaaaacttgctcctccacctcctctaatagcccaaaaaagatcttcccccat 38129576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 435
Target Start/End: Complemental strand, 38090667 - 38090621
Alignment:
Q  389 acaccaacagtaggacaactaccagctggaaaaccatgaacattact 435  Q
    ||||||||||||||||||   ||||||||||||||||||||| ||||    
T  38090667 acaccaacagtaggacaaaccccagctggaaaaccatgaacactact 38090621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 215 - 267
Target Start/End: Complemental strand, 38086445 - 38086393
Alignment:
Q  215 ccaaagcttgatcctccacctcctcttatagcccaaaatagatcctcacccat 267  Q
    ||||| |||| ||||||||| ||||| ||||||||||| | ||||||||||||    
T  38086445 ccaaaacttgctcctccaccacctctaatagcccaaaagaaatcctcacccat 38086393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University