View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4789-Insertion-8 (Length: 400)

Name: NF4789-Insertion-8
Description: NF4789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4789-Insertion-8
NF4789-Insertion-8
[»] chr3 (1 HSPs)
chr3 (8-398)||(54477757-54478148)


Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 8 - 398
Target Start/End: Complemental strand, 54478148 - 54477757
Alignment:
Q  8 aatggtccatgaaagttaaagcctaacaatgctatatgacatgaagaagaaattaccataaaggtaggattctgattccgaacttgtttttgtttattta 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54478148 aatggtccatgaaagttaaagcctaacaatgctatatgacatgaagaagaaattaccataaaggtaggattctgattccgaacttgtttttgtttattta 54478049  T
Q  108 tgtttcatggaaactgcaataaaa---------atgcaatgtggaatttctactcattcatattttccaaagaaaagttacacataattccttaatgatc 198  Q
    ||||||||||||||||||||||||         |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54478048 tgtttcatggaaactgcaataaaatgaaatgaaatgcaatgtgtaatttctactcattcatattttccaaagaaaagttacacataattccttaatgatc 54477949  T
Q  199 tctcggcattttagaagatcatgaagaagtatgaaaatgtgacacttgtacttagaacctgtaaaacttcagnnnnnnnnagttgcattccaaacaaatt 298  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||    
T  54477948 tctcggcattttacaagatcatgaagaagtatgaaaatgtgacacttgtacttagaacctgtaaaacttcagttttttttagttgcattccaaacaaatt 54477849  T
Q  299 caacattcgacttttaaaagaatatatggttctgctcagaagcagaaatgctatttgtttaattcattttttaaatttgttttctcaaaaagactgcatc 398  Q
    ||| |   || | |       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54477848 caa-aaaagaatat-------atatatggttctgctcagaagcagaaatgctatttgtttaattcattttttaaatttgttttctcaaaaagactgcatc 54477757  T

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