View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4789-Insertion-9 (Length: 341)

Name: NF4789-Insertion-9
Description: NF4789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4789-Insertion-9
NF4789-Insertion-9
[»] chr3 (1 HSPs)
chr3 (8-341)||(50488935-50489273)


Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 8 - 341
Target Start/End: Original strand, 50488935 - 50489273
Alignment:
Q  8 aggatagcaggataaacgcgacctttgatcttaaatctgtgactgtatacaaaattaatcttaatgaaagagttgaattgatagatttatgaatgaaaga 107  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||    
T  50488935 aggatagcaggataaacgcgatctttgatcttaaatctgtgactgtatacaaa-ttaatcttaatagaagagttgaattgatagatttatgaatgaaaga 50489033  T
Q  108 ggagagagtaagaaagaactaactagtcgaagagggtagcgggtgaagatggagggacgcgtttcaagagggcaccaacaacctcatcggcaaggaggct 207  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  50489034 ggagagagtaagaaagaactaactagtcggagagggtagcgggtgaagatggagggacgcgtttcaagagggcacaaacaacctcatcggcaaggaggct 50489133  T
Q  208 tccataaacaaaaacg------------ttgtgattctgattctgagtagtacccgctccaactccaactccaactacgctagtattcattgcgacgctc 295  Q
    ||||||||||||||||            ||||||||||||||||||||||| ||||      ||||||||||||||||||||||||||||||||||||||    
T  50489134 tccataaacaaaaacgttgtgattgtgattgtgattctgattctgagtagtgcccg------ctccaactccaactacgctagtattcattgcgacgctc 50489227  T
Q  296 atctttctattctcttctctgcacaacactccactcccttcacagg 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  50489228 atctttctattctcttctctgcacaacactccactcccttcacagg 50489273  T

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