View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4789_high_18 (Length: 320)
Name: NF4789_high_18
Description: NF4789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4789_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 40787098 - 40786795
Alignment:
| Q |
1 |
agctacgattctcctaataggagtaacatgactgactcaagggtaaggcaactaaaaccttcgttttaggtcaaagagcnnnnnnntaaattttcattaa |
100 |
Q |
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| T |
40787098 |
agctacgattctcctaatagtagtaacatgactgactcaagggtaaggcaactaaaaccttcgttttaggtcaaagagcaaaaaaataaattttcattaa |
40786999 |
T |
|
| Q |
101 |
attttataagtaaaaagacctcatatgcacaccnnnnnnntctcatgtaccaaaatttgctttagacctcccttattgttaaagattattggaccagtcc |
200 |
Q |
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| T |
40786998 |
attttataagtaaaaagacctcatatgcacaccaaaaaagtctcatgtaccaaaatttgctttagacctcccttattgttaaagattattggaccagtcc |
40786899 |
T |
|
| Q |
201 |
taaccagtaacaacattaaattcagagaccccttagtgcatacctatgcaaactgtacccatcttaatacatatagcaaagccgaaacttcttcataaac |
300 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
40786898 |
taactagtaacaacattaaattcagagaccccttagtgcatacctatgcaaactgtacccatcttaatacataaagcaaagccgaaacttcttcataaac |
40786799 |
T |
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| Q |
301 |
ttgc |
304 |
Q |
| |
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|||| |
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| T |
40786798 |
ttgc |
40786795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 196
Target Start/End: Original strand, 45166034 - 45166092
Alignment:
| Q |
141 |
tctcatgtaccaaaatt---tgctttagacctcccttattgttaaagattattggacca |
196 |
Q |
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| T |
45166034 |
tctcatataccaaaattacttgctttagatctctcttatttttaaagattattggacca |
45166092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 87 - 126
Target Start/End: Complemental strand, 40852347 - 40852308
Alignment:
| Q |
87 |
taaattttcattaaattttataagtaaaaagacctcatat |
126 |
Q |
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| T |
40852347 |
taaattttcatttaattttacaagtaaaaagacctcatat |
40852308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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