View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4789_high_19 (Length: 297)
Name: NF4789_high_19
Description: NF4789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4789_high_19 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 42789370 - 42789074
Alignment:
| Q |
1 |
cttatctcagacgaaatctactcaggatcagtgtttaattcctctgagtttgtaagcatagcagagattctcgaaactcgtcgatacaaagatgcagaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
42789370 |
cttatctcagacgaaatctactcaggatcagtgtttaattcctctgagtttgtaagcatagcagagattcttgaaactcgtcgatacaaagatgcagaga |
42789271 |
T |
|
| Q |
101 |
gagttcacattgtttatagtctctcaaaagatctcggtctaccaggtttcagagttggaacaatttattcatacaatgataaggttgtaacaacagcccg |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42789270 |
gagttcacattgtctatagtctctcaaaagatctcggtctaccaggtttcagagttggaacaatttattcatacaatgataaggttgtaacaacagcccg |
42789171 |
T |
|
| Q |
201 |
aagaatgtcgagttttaccttgatatcttcacaaacacagcaatttttggctaatatgctatcagacaaaaagtttactgagaagtatattaacatt |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42789170 |
aagaatgtcgagttttaccttgatatcttcacaaacacaacaatttttggctaatatgctatcagacaaaaagtttactgagaagtatattaacatt |
42789074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 42798908 - 42798612
Alignment:
| Q |
1 |
cttatctcagacgaaatctactcaggatcagtgtttaattcctctgagtttgtaagcatagcagagattctcgaaactcgtcgatacaaagatgcagaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
42798908 |
cttatctcagacgaaatctactcaggatcagtgtttaattcctctgagtttgtaagcatagcagagattcttgaaactcgtcgatacaaagatgcagaga |
42798809 |
T |
|
| Q |
101 |
gagttcacattgtttatagtctctcaaaagatctcggtctaccaggtttcagagttggaacaatttattcatacaatgataaggttgtaacaacagcccg |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42798808 |
gagttcacattgtctatagtctctcaaaagatctcggtctaccaggtttcagagttggaacaatttattcatacaatgataaggttgtaacaacagcccg |
42798709 |
T |
|
| Q |
201 |
aagaatgtcgagttttaccttgatatcttcacaaacacagcaatttttggctaatatgctatcagacaaaaagtttactgagaagtatattaacatt |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42798708 |
aagaatgtcgagttttaccttgatatcttcacaaacacaacaatttttggctaatatgctatcagacaaaaagtttactgagaagtatattaacatt |
42798612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 53 - 239
Target Start/End: Complemental strand, 34566991 - 34566805
Alignment:
| Q |
53 |
taagcatagcagagattctcgaaactcgtcgatacaaagatgcagagagagttcacattgtttatagtctctcaaaagatctcggtctaccaggtttcag |
152 |
Q |
| |
|
|||||||||| |||||||| ||| |||||| ||||||||| || || ||| |||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
34566991 |
taagcatagccgagattcttgaatctcgtcaatacaaagacgcggaaagatgtcacattgtttatagtctttctaaagatctcggtctaccaggtttcag |
34566892 |
T |
|
| Q |
153 |
agttggaacaatttattcatacaatgataaggttgtaacaacagcccgaagaatgtcgagttttaccttgatatcttcacaaacaca |
239 |
Q |
| |
|
||| |||||||||||||| ||||| ||||| ||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
34566891 |
agtcggaacaatttattcctacaacgataaagttgttacaacagcacgaagaatgtcgagttttaccttaatatcttcacaaacaca |
34566805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University