View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4789_high_2 (Length: 546)
Name: NF4789_high_2
Description: NF4789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4789_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 19 - 537
Target Start/End: Original strand, 35565504 - 35566035
Alignment:
| Q |
19 |
agacaatacatgtgtgggacaaacaaaataatgacaaccaaactaaatagtctaagcaacaacatattcaacatagaacaaatctaaaacttacgtgtat |
118 |
Q |
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| T |
35565504 |
agacaatacatgtgtgggacaaacaaaataatgacaaccaaactaaatagtctaagcaacaacatattcaacatagaacaaatctaaaacttacgtgtat |
35565603 |
T |
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| Q |
119 |
agagcaagaagataaagagagaagaggaagaaacgtaccaaaattgtttattctttcaaggtgtttacaatatg--tcttaaccctagatcctcaaccaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
35565604 |
agagcaagaagataaagagagaagaggaagaaacgtaccaaaattgtttattctttcaaggtgtttacaatatgtttcttaaccctagatcctcaaccaa |
35565703 |
T |
|
| Q |
217 |
aagccatcaacataaaagcaagtactcaacacaagagccataatcttctctttttgttccctcttcctagtctcttgctcttgaaccctagtcactctcc |
316 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35565704 |
aagccatcaacataaaagcaagtattcaacacaagagccataatcttctctttttgttccctcttcctagtctcttgctcttgaaccctagtcactctcc |
35565803 |
T |
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| Q |
317 |
caaaagacaccaaccattagcttttaagtttcttaacgatccttttt-----------nnnnnnnngtttcttaaggatccctcttttattagtacccaa |
405 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||| | |
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| T |
35565804 |
caaaagacaccaaccattagcttttaagtttcttaaggatcctctttcaaaaacaaaaaaaaaaaagtttcttaaggatccctcttttattagtacccta |
35565903 |
T |
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| Q |
406 |
aataatgagataaacatctaatttataggcaaaacgtgtaattcaaattaccagctctggtatttaacatgattcaaattactatttccaacacgccatt |
505 |
Q |
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| T |
35565904 |
aataatgagataaacatctaatttataggcaaaacgtgtaattcaaattaccaactctggtatttaacatgattcaaattactatttccaacacgccatt |
35566003 |
T |
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| Q |
506 |
ccacttctacatgcatcctccttaagtattat |
537 |
Q |
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| T |
35566004 |
ctacttctacatgcatcctccttaagtattat |
35566035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 52 - 104
Target Start/End: Complemental strand, 16595736 - 16595684
Alignment:
| Q |
52 |
acaaccaaactaaatagtctaagcaacaacatattcaacatagaacaaatcta |
104 |
Q |
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|||||||||||||| | || || |||||||| | ||||||||||||||||||| |
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| T |
16595736 |
acaaccaaactaaacaatccaaacaacaacaaactcaacatagaacaaatcta |
16595684 |
T |
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