View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4789_high_24 (Length: 248)
Name: NF4789_high_24
Description: NF4789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4789_high_24 |
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Alignment Details
Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 65 - 139
Target Start/End: Original strand, 29606750 - 29606824
Alignment:
| Q |
65 |
tgtttcacttccaccattaccattaccaccagcttctaaaccaccaaaggtatccccagcacctgcaaaggttcc |
139 |
Q |
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| T |
29606750 |
tgtttcacttccaccattaccattaccaccagcttctaaaccaccaaaggtatccccagcacctgcaaaggttcc |
29606824 |
T |
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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 209 - 248
Target Start/End: Original strand, 29606894 - 29606933
Alignment:
| Q |
209 |
cgcaccagacaaagaaacaccggcaccagcacctacacac |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
29606894 |
cgcaccagacaaagaaacaccggcaccagcacctacacac |
29606933 |
T |
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