View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4789_high_26 (Length: 242)
Name: NF4789_high_26
Description: NF4789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4789_high_26 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 42186593 - 42186368
Alignment:
| Q |
1 |
caccacccaaatattcagcaattattcttgctcccctcttagttgcactctccaagctctccattatctggtctcgataataaaaataaaaatcaagttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42186593 |
caccacccaaatattcagcaattattcttgctcccctctttgttgcactctccaagctctccattatctggtctcgataataaaaataaaaatcaagttg |
42186494 |
T |
|
| Q |
101 |
acaacattttgaaccgcatgtaaatacacaatgttagtaaaagatatagtacatcctaaaagaacgatcaaactcttctaaagtgagcaactcattaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
42186493 |
acaacattttgaaccgcatgtaaatacacaatgttagtaaaagatatagtacatcctaaaagaacgatcagactcttctaaagtgaacaactcattaaaa |
42186394 |
T |
|
| Q |
201 |
agaaatcaatgaataatggtgagttt |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
42186393 |
agaaatcaatgaataatggtgagttt |
42186368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 42196354 - 42196286
Alignment:
| Q |
1 |
caccacccaaatattcagcaattattcttgctcccctcttagttgcactctccaagctctccattatct |
69 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
42196354 |
caccacccaaatattcagcaattatttttgctcccctctttgttgcactctctaagctctccattatct |
42196286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 42203761 - 42203693
Alignment:
| Q |
1 |
caccacccaaatattcagcaattattcttgctcccctcttagttgcactctccaagctctccattatct |
69 |
Q |
| |
|
|||||||||||||||| || | |||||||||||| ||||| ||||||||| |||||||||||||||| |
|
|
| T |
42203761 |
caccacccaaatattctgccagtattcttgctcctctcttcactgcactctctaagctctccattatct |
42203693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University