View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4789_high_28 (Length: 239)
Name: NF4789_high_28
Description: NF4789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4789_high_28 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 24 - 239
Target Start/End: Original strand, 8865280 - 8865495
Alignment:
| Q |
24 |
cacttatcatcctaaacaatttttgttatacatgtcctgcttttatttgtggcagctatatgaagcaatgagggcagtaacatggtcactatttgctagt |
123 |
Q |
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| T |
8865280 |
cacttatcatcctaaccaatttttgttatacatgtcctgcttttatttgtggcagctatatgaagcaatgagggcagtaacatggtcactatttgctagt |
8865379 |
T |
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| Q |
124 |
agaaaagcactaaactcaataacaatcaattacaagaatggatttgttcaagcattccatagagatctaaaagataacaacacattttacatctactcag |
223 |
Q |
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| T |
8865380 |
agaaaagcactaaactcaataacaatcaattacaagaatggatttgttcaagcattccatagagatctaaaagataacaacacattttacatctactcag |
8865479 |
T |
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| Q |
224 |
atctttctaattactc |
239 |
Q |
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| T |
8865480 |
atctttctaattactc |
8865495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 111
Target Start/End: Complemental strand, 40558533 - 40558476
Alignment:
| Q |
54 |
catgtcctgcttttatttgtggcagctatatgaagcaatgagggcagtaacatggtca |
111 |
Q |
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| T |
40558533 |
catgtcttgcttttatttgtatcatctatatgaagcaacgagggcagtaacatggtca |
40558476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 239
Target Start/End: Complemental strand, 40558468 - 40558411
Alignment:
| Q |
182 |
atagagatctaaaagataacaacacattttacatctactcagatctttctaattactc |
239 |
Q |
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| T |
40558468 |
atagagatctaaaagataagaacacattttccatctaccaagatttttcaaattactc |
40558411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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