View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4789_high_30 (Length: 237)
Name: NF4789_high_30
Description: NF4789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4789_high_30 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 14 - 221
Target Start/End: Original strand, 55124011 - 55124218
Alignment:
| Q |
14 |
tggttttggcatattctttgtgtgtgatcagcattttcgcaagttcgtatggatcaagttatttttcttcataaaatagatataagcttttcacttttcg |
113 |
Q |
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| T |
55124011 |
tggttttggcatattctttgtgtgtgatcagcattttcgcaagttcgtatggatcaagttatttttcttcatagaatagatataagcttttcacttttcg |
55124110 |
T |
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| Q |
114 |
cactcttgtttattttaccatcgcatgtattgttgttaaattccaaaacgtccaacgtttccttatatcaagaacaagaaagaaatcaaattatatgagc |
213 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55124111 |
cactcttgttttttttaccatcgcatgtattgttgttaaattccaaaacgtccaacgtttccttatatcaagaacaagaaagaaatcaaattatatgagc |
55124210 |
T |
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| Q |
214 |
aagtatat |
221 |
Q |
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|||||||| |
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| T |
55124211 |
aagtatat |
55124218 |
T |
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