View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4789_high_4 (Length: 476)

Name: NF4789_high_4
Description: NF4789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4789_high_4
NF4789_high_4
[»] chr7 (5 HSPs)
chr7 (232-466)||(22684112-22684348)
chr7 (1-191)||(22684389-22684580)
chr7 (232-339)||(22695722-22695831)
chr7 (393-466)||(22695522-22695596)
chr7 (74-126)||(23423220-23423271)
[»] chr3 (2 HSPs)
chr3 (76-116)||(14782856-14782896)
chr3 (76-116)||(9198640-9198680)
[»] chr6 (1 HSPs)
chr6 (74-116)||(10764084-10764126)
[»] chr8 (2 HSPs)
chr8 (76-121)||(26456448-26456492)
chr8 (80-144)||(14226973-14227036)


Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 232 - 466
Target Start/End: Complemental strand, 22684348 - 22684112
Alignment:
Q  232 agaaacacatcatagcctacaactgtaattgcgactgcaata--aaggttttagagatctcctaaacgccaattgtgaccgcaattgcggccacatttgc 329  Q
    ||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  22684348 agaaacacatcatagcctacaactgtaattgcggctgcaatataaaggttttagagatctcctaaacgccaattgtgaccgcaattgcagccacatttgc 22684249  T
Q  330 tcaagttttgtagcatattggtgtcttacttgccaatatgttactcactatcgcaggaagcaagttataatgacaaagagaatgaatttgcagtgtttaa 429  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  22684248 tcaagttttgtagcatattggtgtcttacttgccaatatgttactcactatcgctggaagcaagttataatgacaaagagaatgaatttgcagtgtttaa 22684149  T
Q  430 ttaatgctttatttgtttaaatttaccacaggttctg 466  Q
    ||||||||||||||||| |||||||||||||||||||    
T  22684148 ttaatgctttatttgttcaaatttaccacaggttctg 22684112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 22684580 - 22684389
Alignment:
Q  1 gtgcgttgctctattgcacttacccttctgatgaaa-gcgtctctggtgtctgacatggatacgacatcgatcaacacatgtgattacgttcaattaact 99  Q
    |||||||||||| |||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  22684580 gtgcgttgctctgttgcacttacacttctgatgaaaagtgtctctggtgtctgacatggatacgacatcgatcgatacatgtgattacgttcaattaact 22684481  T
Q  100 catattttcaaatttttcaccaatgtcaatgtgtctgtgtcagtgttgatttgccgtgtccttgtttgtggaagtgcttcataggtgcattg 191  Q
    |||||||||||||||||||||  ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  22684480 catattttcaaatttttcacccgtgtcaatgtgtctgtgtcagtgtcgatttgtcgtgtccttgtttgtggaagtgcttcataggtgcattg 22684389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 232 - 339
Target Start/End: Complemental strand, 22695831 - 22695722
Alignment:
Q  232 agaaacacatcatagcctacaactgtaattgcgactgcaata--aaggttttagagatctcctaaacgccaattgtgaccgcaattgcggccacatttgc 329  Q
    ||||||||||||||||||||||||||||||||| |||| |||  |||||||||||||||||||  ||| || |||||||||||||||| |||||||||||    
T  22695831 agaaacacatcatagcctacaactgtaattgcggctgcgatataaaggttttagagatctcctctacggcagttgtgaccgcaattgcagccacatttgc 22695732  T
Q  330 tcaagttttg 339  Q
    | ||||||||    
T  22695731 taaagttttg 22695722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 393 - 466
Target Start/End: Complemental strand, 22695596 - 22695522
Alignment:
Q  393 gttataatgacaaagagaat-gaatttgcagtgtttaattaatgctttatttgtttaaatttaccacaggttctg 466  Q
    |||||||||||||||| ||| || ||| | |||| ||||| |||||||||||||| ||||||||  |||||||||    
T  22695596 gttataatgacaaagacaatagatttttcggtgtgtaattgatgctttatttgttcaaatttactgcaggttctg 22695522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 74 - 126
Target Start/End: Original strand, 23423220 - 23423271
Alignment:
Q  74 acacatgtgattacgttcaattaactcatattttcaaatttttcaccaatgtc 126  Q
    |||||||||||||| ||||||||| |||| | ||||||||||| |||||||||    
T  23423220 acacatgtgattactttcaattaaatcatttattcaaattttt-accaatgtc 23423271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 116
Target Start/End: Original strand, 14782856 - 14782896
Alignment:
Q  76 acatgtgattacgttcaattaactcatattttcaaattttt 116  Q
    |||||||||||||||||||||| |||| |||||||||||||    
T  14782856 acatgtgattacgttcaattaattcattttttcaaattttt 14782896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 76 - 116
Target Start/End: Original strand, 9198640 - 9198680
Alignment:
Q  76 acatgtgattacgttcaattaactcatattttcaaattttt 116  Q
    ||||||||||| |||||||||| |||| |||||||||||||    
T  9198640 acatgtgattatgttcaattaattcattttttcaaattttt 9198680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 116
Target Start/End: Original strand, 10764084 - 10764126
Alignment:
Q  74 acacatgtgattacgttcaattaactcatattttcaaattttt 116  Q
    ||||||| |||||||||||||||| |||| |||||||||||||    
T  10764084 acacatgcgattacgttcaattaattcattttttcaaattttt 10764126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 121
Target Start/End: Complemental strand, 26456492 - 26456448
Alignment:
Q  76 acatgtgattacgttcaattaactcatattttcaaatttttcacca 121  Q
    |||||||||| |||||||||||||||| ||||||||||||| ||||    
T  26456492 acatgtgattgcgttcaattaactcat-ttttcaaatttttaacca 26456448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 80 - 144
Target Start/End: Complemental strand, 14227036 - 14226973
Alignment:
Q  80 gtgattacgttcaattaactcatattttcaaatttttcaccaatgtcaatgtgtctgtgtcagtg 144  Q
    ||||||| |||||||||| |||| ||||||||||||| |   |||||||||||| ||||||||||    
T  14227036 gtgattatgttcaattaattcattttttcaaattttt-attgatgtcaatgtgtatgtgtcagtg 14226973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University