View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4789_high_9 (Length: 410)
Name: NF4789_high_9
Description: NF4789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4789_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 119; Significance: 1e-60; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 127 - 362
Target Start/End: Complemental strand, 26428378 - 26428149
Alignment:
| Q |
127 |
cctcaaacttccccttaattttctgatcccacaaactaccatgaggcagtgaagatgaaatcagttttatatcacagctatactctctcaacaacaacag |
226 |
Q |
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| T |
26428378 |
cctcaaacttctccttaattttctcaacccacaaactactatgaggcagtgaagatgaaatcagttttatatcatagctgtactctc--aacaacaacac |
26428281 |
T |
|
| Q |
227 |
tgtactttacacttctttttctcatttctctctcaaaataaattcattcgtagtcnnnnnnnacccttcaannnnnnnnnnnnnnnnaaaccctaaaacc |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||| |
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| T |
26428280 |
tgtactttacacttctttttctcatttctctctcaaaataaagtcattcgtagtctttttttacccttcaa----tctctctctctcaaaccctaaaacc |
26428185 |
T |
|
| Q |
327 |
ttgcaaagattcacacatatctacaagatttcttct |
362 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
26428184 |
ttgcaaagattcacacatatctacaagatttcttct |
26428149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 62 - 124
Target Start/End: Original strand, 50054245 - 50054307
Alignment:
| Q |
62 |
aaaggaaaggctaggattgcacaggagaagacatgagagaaacttcacgggagacaatccgct |
124 |
Q |
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| T |
50054245 |
aaaggaaaggctaggattgcacatgagaagactggagagaaacttcaggggagacaatccgct |
50054307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 351 - 393
Target Start/End: Complemental strand, 26428144 - 26428102
Alignment:
| Q |
351 |
aagatttcttctatatactttcttaattctagcacactgtcag |
393 |
Q |
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| T |
26428144 |
aagatttcttctatatactttcttaattctagcacactgtcag |
26428102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 17 - 127
Target Start/End: Complemental strand, 42660087 - 42659977
Alignment:
| Q |
17 |
ctgtgatttaattggttttaatcgtagccgttga----tctttaaaaagaaaggaaaggctaggattgcacaggagaagacatgagagaaacttcacggg |
112 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
42660087 |
ctgtgatttaattggttttaatcgtagccgttgacatgtctttaa----aaaggaaaggctaggattgcacaggagaagaccggagagaaacttcacggg |
42659992 |
T |
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| Q |
113 |
agacaatccgctccc |
127 |
Q |
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| T |
42659991 |
agacaatccgctccc |
42659977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 17 - 127
Target Start/End: Original strand, 42662337 - 42662447
Alignment:
| Q |
17 |
ctgtgatttaattggttttaatcgtagccgttga----tctttaaaaagaaaggaaaggctaggattgcacaggagaagacatgagagaaacttcacggg |
112 |
Q |
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|||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
42662337 |
ctgtgatttaattgattttaatcgtagccgttgacatgtctttaa----aaaggaaaggctaggatttcacaggagaagactggagagaaacttcacggg |
42662432 |
T |
|
| Q |
113 |
agacaatccgctccc |
127 |
Q |
| |
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||||||||||||||| |
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| T |
42662433 |
agacaatccgctccc |
42662447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 17 - 124
Target Start/End: Complemental strand, 40396296 - 40396187
Alignment:
| Q |
17 |
ctgtgatttaattggttttaatcgtagccgttgat------ctttaaaaagaaaggaaaggctaggattgcacaggagaagacatgagagaaacttcacg |
110 |
Q |
| |
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||||||||||||||||||||| ||||||||||||| |||||||||| ||||| ||| |||||||||||||||||| ||||||||||||||| |
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| T |
40396296 |
ctgtgatttaattggttttaaccgtagccgttgatatatgtctttaaaaag----gaaagactaagattgcacaggagaagactggagagaaacttcacg |
40396201 |
T |
|
| Q |
111 |
ggagacaatccgct |
124 |
Q |
| |
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|||||||||||||| |
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| T |
40396200 |
ggagacaatccgct |
40396187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 21 - 129
Target Start/End: Original strand, 14592035 - 14592146
Alignment:
| Q |
21 |
gatttaattggttttaatcgtagccgttgat----ctttaaaaagaaaggaaaggctaggattgcacaggagaagacatgagagaaacttcacgggagac |
116 |
Q |
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||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||| |
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| T |
14592035 |
gatttaattggttttaatcatagccgttgatatgtctttaaaaagaa-ggaaaggctaggattgcacaggagaagactggagagaaacttcactggagac |
14592133 |
T |
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| Q |
117 |
aatccgctcccct |
129 |
Q |
| |
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|||||||||||| |
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| T |
14592134 |
gatccgctcccct |
14592146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 20 - 127
Target Start/End: Complemental strand, 31117948 - 31117841
Alignment:
| Q |
20 |
tgatttaattggttttaatcgtagccgttga----tctttaaaaagaaaggaaaggctaggattgcacaggagaagacatgagagaaacttcacgggaga |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
31117948 |
tgatttaattggttttaatcgtagccgttgacatgtctttaa----aaaggaaaggctaggattgcacaggagaagactggagagaaacttcacaggaga |
31117853 |
T |
|
| Q |
116 |
caatccgctccc |
127 |
Q |
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|||||||||||| |
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| T |
31117852 |
caatccgctccc |
31117841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 181 - 273
Target Start/End: Original strand, 28008623 - 28008715
Alignment:
| Q |
181 |
atgaaatcagttttatat--cacagctatactctctcaacaacaacagtgtacttt-acacttctttttctcatttctctctcaaaataaattcat |
273 |
Q |
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|||||||||||||||||| || |||| || ||||||||||||| | |||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
28008623 |
atgaaatcagttttatatatcatagctgtattctctcaacaacac---tctacttttacacttctttttctcatttctctctcaaaataaagtcat |
28008715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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