View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4789_low_1 (Length: 665)
Name: NF4789_low_1
Description: NF4789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4789_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 519; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 1 - 647
Target Start/End: Original strand, 31629444 - 31630082
Alignment:
| Q |
1 |
ttgctttcaagcctcactttgactaggagtcatccaaagtaacttctatattggattgacaattttacaccgactttacttcaaacttcccttgagaatg |
100 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31629444 |
ttgctttcaagcctcactttgac--------atccaaagtaacttctatattggattgacaattttacaccgactttacttcaaacttcccttgagaatg |
31629535 |
T |
|
| Q |
101 |
agattgtctaaatataaatcacttatttcaaaatcgattataaccaaatgaattatgttccaaatcaaaaaatatttaactaaacacacctaatcaaacc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| | ||||||||||||||||||| |
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| T |
31629536 |
agattgtctaaatataaatcacttatttcaaaatcgattataaccaaatgaattatgtcccaaatcacaaaatatttacccaaacacacctaatcaaacc |
31629635 |
T |
|
| Q |
201 |
acactcgctatttgtggtttaagaaatgtttcaatatattatcaatgagggaaacaaatnnnnnnnntaaacacatgctaagatggattgatcattgatg |
300 |
Q |
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| T |
31629636 |
aaactagctatttgtggtttaagaaatgtttcaatatattatcaatgagggaaacaaataaaaaaaataaacacatgctaagatggattgatcattgatg |
31629735 |
T |
|
| Q |
301 |
tctttgtttaattaaagttcaaggttaattccctaatatatactattaatgttacaatgcttccatttcccaaatgcctaaggctttatctgattgatct |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31629736 |
tctttgtttaattaaagttcaaggttaattccctaatatatactattaatgttacaatgcttccatttcccaaatgcctaaggctttatctgattgatct |
31629835 |
T |
|
| Q |
401 |
aagcagacaaagaaggaatgtgaacatctaatcaatacagccaagccaagtatgcaaaaatcatctgttgttgataatgaaacaggaaagagtaaggaca |
500 |
Q |
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| T |
31629836 |
aagcagacaaagaaggaatgtgaacatctaatcaatacagccaagccaagtatgcaaaaatcatctgttgttgataatgaaacaggaaagagtaaggaca |
31629935 |
T |
|
| Q |
501 |
gcaggttagnnnnnnnnnnnnncgaccaaaaattctttagcaagttccctctaagttcagtgttgaatattataaatcttgttttccttgtttagattgc |
600 |
Q |
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| T |
31629936 |
gcaggttagtttttttatttttcaaccaaaaattatttagcaagttccctctaagttcagtgttgaatattataaatcttgtttgccttgtttagattgc |
31630035 |
T |
|
| Q |
601 |
cattgtcacttcattgatggttaaccttttgtttacatattgcattt |
647 |
Q |
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| T |
31630036 |
cattgtcacttcattgatggttaaccttttgtttacatattgcattt |
31630082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 305 - 489
Target Start/End: Original strand, 31651342 - 31651522
Alignment:
| Q |
305 |
tgtttaattaaagttcaaggttaattccctaatatatactattaatgttacaatgcttccatttcccaaatgcctaaggctttatctgattgatctaagc |
404 |
Q |
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| T |
31651342 |
tgtttaattatagttcagggttaatcccctaa-atatagttttaatgttacaaat-ttccatttcctaaatgc-taaggcta-agctgattgatctgagc |
31651437 |
T |
|
| Q |
405 |
agacaaagaaggaatgtgaacatctaatcaatacagccaagccaagtatgcaaaaatcatctgttgttgataatgaaacaggaaa |
489 |
Q |
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| T |
31651438 |
agacaaaagaggaatgtgaacatctaatcaatatagcaaagcctagtatgcataaatcggctgttattgacgaggaaacaggaaa |
31651522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 390 - 509
Target Start/End: Original strand, 31646008 - 31646124
Alignment:
| Q |
390 |
ctgattgatctaagcagacaaagaaggaatgtgaacatctaatcaatacagccaagccaagtatgcaaaaatcatctgttgttgataatgaaacaggaaa |
489 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||| ||||| | |||||| ||||||| ||||| |
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| T |
31646008 |
ctgattgatctaagcagacaaaagaggaatgtgaacatctaatcaatatagccaagcctagtatgcataaatcgac---tgttgacgatgaaacgggaaa |
31646104 |
T |
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| Q |
490 |
gagtaaggacagcaggttag |
509 |
Q |
| |
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|||| ||||| |||||||| |
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| T |
31646105 |
gagtgtggacaacaggttag |
31646124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 346 - 462
Target Start/End: Original strand, 31656156 - 31656269
Alignment:
| Q |
346 |
ttaatgttacaatgcttccatttcccaaatgcctaaggctttatctgattgatctaagcagacaaagaaggaatgtgaacatctaatcaatacagccaag |
445 |
Q |
| |
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|||||||||||| | |||||||||| |||||| ||||||| | ||||||||||| |||||||||| ||||||| |||||||||||||||| ||| ||| |
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| T |
31656156 |
ttaatgttacaa-gtttccatttcctaaatgc-taaggctaaa-ctgattgatctgagcagacaaaagaggaatgcgaacatctaatcaatatagcaaag |
31656252 |
T |
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| Q |
446 |
ccaagtatgcaaaaatc |
462 |
Q |
| |
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| T |
31656253 |
cctagtatgcataaatc |
31656269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 397 - 509
Target Start/End: Original strand, 31637098 - 31637210
Alignment:
| Q |
397 |
atctaagcagacaaagaaggaatgtgaacatctaatcaatacagccaagccaagtatgcaaaaatcatctgttgttgataatgaaacaggaaagagtaag |
496 |
Q |
| |
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|||| ||||| |||| |||||||||||||||||||||||| ||||||||| | |||| ||||| ||||||||||| || ||||||||||||| | |
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| T |
31637098 |
atcttagcaggcaaaagaggaatgtgaacatctaatcaatatagccaagcctgatgtgcagaaatcgactgttgttgatgatacaacaggaaagagtgtg |
31637197 |
T |
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| Q |
497 |
gacagcaggttag |
509 |
Q |
| |
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|||||||||||| |
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| T |
31637198 |
aacagcaggttag |
31637210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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