View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4789_low_12 (Length: 399)
Name: NF4789_low_12
Description: NF4789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4789_low_12 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 316; Significance: 1e-178; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 15 - 381
Target Start/End: Original strand, 31629716 - 31630082
Alignment:
| Q |
15 |
agatggattgatcattgatgtctttgtttaattaaagttcaaggttaattccctaatatatactattaatgttacaatgcttccatttcccaaatgccta |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31629716 |
agatggattgatcattgatgtctttgtttaattaaagttcaaggttaattccctaatatatactattaatgttacaatgcttccatttcccaaatgccta |
31629815 |
T |
|
| Q |
115 |
aggctttatctgattgatctaagcagacaaagaaggaatgtgaacatctaatcaatacagccaagccaagtatgcaaaaatcatctgttgttgataatga |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31629816 |
aggctttatctgattgatctaagcagacaaagaaggaatgtgaacatctaatcaatacagccaagccaagtatgcaaaaatcatctgttgttgataatga |
31629915 |
T |
|
| Q |
215 |
aacaggaaagagtaaggacagcaggttagnnnnnnnnnnnnncgaccaaaaattctttagcaagttccctctaagttcagtgttgaatattataaatctt |
314 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31629916 |
aacaggaaagagtaaggacagcaggttagtttttttatttttcaaccaaaaattatttagcaagttccctctaagttcagtgttgaatattataaatctt |
31630015 |
T |
|
| Q |
315 |
gttttccttgtttagattgccattgtcacttcattgatggttaaccttttgtttacatattgcattt |
381 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31630016 |
gtttgccttgtttagattgccattgtcacttcattgatggttaaccttttgtttacatattgcattt |
31630082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 39 - 223
Target Start/End: Original strand, 31651342 - 31651522
Alignment:
| Q |
39 |
tgtttaattaaagttcaaggttaattccctaatatatactattaatgttacaatgcttccatttcccaaatgcctaaggctttatctgattgatctaagc |
138 |
Q |
| |
|
|||||||||| |||||| ||||||| |||||| ||||| | |||||||||||| |||||||||| |||||| ||||||| | ||||||||||| ||| |
|
|
| T |
31651342 |
tgtttaattatagttcagggttaatcccctaa-atatagttttaatgttacaaat-ttccatttcctaaatgc-taaggcta-agctgattgatctgagc |
31651437 |
T |
|
| Q |
139 |
agacaaagaaggaatgtgaacatctaatcaatacagccaagccaagtatgcaaaaatcatctgttgttgataatgaaacaggaaa |
223 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||| ||||| |||||||| ||||| ||||| |||| | ||||||||||| |
|
|
| T |
31651438 |
agacaaaagaggaatgtgaacatctaatcaatatagcaaagcctagtatgcataaatcggctgttattgacgaggaaacaggaaa |
31651522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 124 - 243
Target Start/End: Original strand, 31646008 - 31646124
Alignment:
| Q |
124 |
ctgattgatctaagcagacaaagaaggaatgtgaacatctaatcaatacagccaagccaagtatgcaaaaatcatctgttgttgataatgaaacaggaaa |
223 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||| ||||| | |||||| ||||||| ||||| |
|
|
| T |
31646008 |
ctgattgatctaagcagacaaaagaggaatgtgaacatctaatcaatatagccaagcctagtatgcataaatcgac---tgttgacgatgaaacgggaaa |
31646104 |
T |
|
| Q |
224 |
gagtaaggacagcaggttag |
243 |
Q |
| |
|
|||| ||||| |||||||| |
|
|
| T |
31646105 |
gagtgtggacaacaggttag |
31646124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 80 - 196
Target Start/End: Original strand, 31656156 - 31656269
Alignment:
| Q |
80 |
ttaatgttacaatgcttccatttcccaaatgcctaaggctttatctgattgatctaagcagacaaagaaggaatgtgaacatctaatcaatacagccaag |
179 |
Q |
| |
|
|||||||||||| | |||||||||| |||||| ||||||| | ||||||||||| |||||||||| ||||||| |||||||||||||||| ||| ||| |
|
|
| T |
31656156 |
ttaatgttacaa-gtttccatttcctaaatgc-taaggctaaa-ctgattgatctgagcagacaaaagaggaatgcgaacatctaatcaatatagcaaag |
31656252 |
T |
|
| Q |
180 |
ccaagtatgcaaaaatc |
196 |
Q |
| |
|
|| |||||||| ||||| |
|
|
| T |
31656253 |
cctagtatgcataaatc |
31656269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 131 - 243
Target Start/End: Original strand, 31637098 - 31637210
Alignment:
| Q |
131 |
atctaagcagacaaagaaggaatgtgaacatctaatcaatacagccaagccaagtatgcaaaaatcatctgttgttgataatgaaacaggaaagagtaag |
230 |
Q |
| |
|
|||| ||||| |||| |||||||||||||||||||||||| ||||||||| | |||| ||||| ||||||||||| || ||||||||||||| | |
|
|
| T |
31637098 |
atcttagcaggcaaaagaggaatgtgaacatctaatcaatatagccaagcctgatgtgcagaaatcgactgttgttgatgatacaacaggaaagagtgtg |
31637197 |
T |
|
| Q |
231 |
gacagcaggttag |
243 |
Q |
| |
|
|||||||||||| |
|
|
| T |
31637198 |
aacagcaggttag |
31637210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University