View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4789_low_13 (Length: 398)
Name: NF4789_low_13
Description: NF4789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4789_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 20 - 390
Target Start/End: Complemental strand, 45103906 - 45103536
Alignment:
| Q |
20 |
cgtccatctcactagaagatgataaactgcttccagaatatgcaacaggttgctgaagaattatgtctctcaagaactcttcttcatcatcagtacttgt |
119 |
Q |
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| T |
45103906 |
cgtccatctcactagaagatgataaactgcttccagaatatgtaacaggttgctgaagaattatgtctctcaagaactcttcttcatcatcagtacttgt |
45103807 |
T |
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| Q |
120 |
ttgatgacaatattgcccttgcatattctctacatcaaccatttcctattgtaataatgacagttagttaaaaagttaaaacaaggtttatgagaaaata |
219 |
Q |
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| T |
45103806 |
ttgatgacaatattgcccttgcatattctctacatcaaccatttcctattgtaataatgacagttagttaaaaagttaaaacaaggtttatgagaaaata |
45103707 |
T |
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| Q |
220 |
taaatgatacataacannnnnnnnnngttgatcataatgatttacgatttatnnnnnnncataaagtataacttatgagaaataattatatgtgtagcta |
319 |
Q |
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| T |
45103706 |
taaatgatacataacattttttttttgttgatcataatgatttaggatttataaaaaaacataaagtataacttatgagaaataattatatgtgtagcta |
45103607 |
T |
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| Q |
320 |
gtgttattaccgaatgaagaggccaattttcccatgtttgctccatcagaagaaaatgtgttctgttctgt |
390 |
Q |
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| T |
45103606 |
gtgttattaccgaatgaagaggccaattttcccatgtttgctccatcagaagaaaatgtgttctgttctgt |
45103536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 22 - 171
Target Start/End: Complemental strand, 45130530 - 45130384
Alignment:
| Q |
22 |
tccatctcactagaagatgataaactgcttccagaatatgcaacaggttgctgaagaattatgtctctcaagaactcttcttcatcatcagtacttgttt |
121 |
Q |
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| T |
45130530 |
tccatctcattagaggatgatatact---tccagaatatgtaacaggttgctgaaggattatgtctctcaagaactcttcttcatcatcagcactagttt |
45130434 |
T |
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| Q |
122 |
gatgacaatattgcccttgcatattctctacatcaaccatttcctattgt |
171 |
Q |
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| T |
45130433 |
gatgacaatattgccctagcaaaacctctacatcacccaattcctattgt |
45130384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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