View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4789_low_14 (Length: 382)
Name: NF4789_low_14
Description: NF4789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4789_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 14 - 376
Target Start/End: Original strand, 15634412 - 15634774
Alignment:
| Q |
14 |
gatatgaacacactaagacatcgagattaccaatcgtgtaaacttcaacctaaatggttgcgcaaatcacttaaaaataagacatacatttcatacaagt |
113 |
Q |
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| T |
15634412 |
gatatgaacacactaagacatggagattaccaatcgtttaaacttcaacctaaatggttgcgcaaatcacttagaaataagacatacatttcatacaagt |
15634511 |
T |
|
| Q |
114 |
gctttacgaagcaatataagggtaataaatgagcatacaaagtataaattcaagttatcaacagtttgtgcttcgaacgaaccggttgcacaaaatactt |
213 |
Q |
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| T |
15634512 |
gctttacgaagtaatataagggtaataaatgagcatacaaagtataaattcaagttatcaacagtttgtgcttcgaacgaaccggttgcacaaaatactt |
15634611 |
T |
|
| Q |
214 |
gaaaattaaaacatttctaagaaattatggaagtgaagcataacgcgcatacnnnnnnnnnnnnnnnnnnncgaaattagattatacaaatttggtgtaa |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
15634612 |
gaaaattaaaacatttctaagaaattatggaagtgaagcataatgcgcatacaaattaaaataaaaagaaacgaaattagattatacaaatttggtgtaa |
15634711 |
T |
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| Q |
314 |
accgcagagggctacacattgatatgagcactacacccaggtacatcaaaagtcataaaatag |
376 |
Q |
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|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
15634712 |
accgcagagggctacacattgatatgagcactacgcctaggtacatcaaaagtcataaaatag |
15634774 |
T |
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