View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4789_low_15 (Length: 378)
Name: NF4789_low_15
Description: NF4789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4789_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 11 - 280
Target Start/End: Complemental strand, 35147417 - 35147140
Alignment:
| Q |
11 |
cataggacagagcaaatgggactggcagatggcaaacgtctttggtggggacggaaataacaatatgatttcttcattttctttgacacaattgtgattt |
110 |
Q |
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| T |
35147417 |
cataagacagagcaaatgggactggcagatggcaaacgtctttggtggggacggaaataacaatatgatttcttcattttcttttacacaattgtgattt |
35147318 |
T |
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| Q |
111 |
tatcatttcttcacacattgat---attaattactat----aataattctttatagttgt-nnnnnnnttgtttcaataaaataattgaagttataaaac |
202 |
Q |
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| T |
35147317 |
tatcatttcttcacacattgatattattaattactataataaataattctttatagttgtaaaaaaaattgtttcattaaaataattgaagttataaaac |
35147218 |
T |
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| Q |
203 |
aaatacttacgttactcagaatagaacaaaatttagatccattaaacaaaatctcaacaagtcttatgaaagaaaacg |
280 |
Q |
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| T |
35147217 |
aaatacttacgttactcagaatagaacaaaatttagatccattaaacaaaatctcaacaagtcttatgaaagaaaacg |
35147140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 272 - 362
Target Start/End: Complemental strand, 35146698 - 35146610
Alignment:
| Q |
272 |
aagaaaacgaggtagaaaaataagtctagcaaattgccaaattgtattttatgatggagattagttcctactaagactacgaagtcgataa |
362 |
Q |
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| T |
35146698 |
aagaaaactaggtagaaaaataa--ctagcaaattaccaaattgtattttatgatggagattagttcctactacgactacgaagtcgataa |
35146610 |
T |
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