View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4789_low_17 (Length: 355)
Name: NF4789_low_17
Description: NF4789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4789_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 12 - 334
Target Start/End: Original strand, 13399846 - 13400168
Alignment:
| Q |
12 |
atcatcaacctataaaattagcaggatttaacagatatatgttccttcgatttcatgctgccacttatgcttttatagataaagtttcaatacaaattca |
111 |
Q |
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| T |
13399846 |
atcatcaacctataaaattagcaggatttaacagatatatgttccttcgatttcatgctgccacttatgcttttatagataaagtttcaatacaaattca |
13399945 |
T |
|
| Q |
112 |
aatatcagtttcttggtccaaaactaaactccaattaacaaaattcaagtagaaacaaaaaatgtatacttcggtgaaggattgaaagtaaagactaatg |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
13399946 |
aatatcagtttcttggtccaaaactaaactccaattaacaaaattcaagtagaaacaaaaaatgtatatttcggtgaaggattgaaagtaaagactaatg |
13400045 |
T |
|
| Q |
212 |
ctagctacaagagtcttcactgaacttttatactataactgattgagtagcagcacatatttcacatacattatttataccaaagtcccataatggccgc |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13400046 |
ctagctacaagagtcttcactgaacttttatactataactgattgagtagcagcacatatttcacatacattatttataccaaagtcccataatggccgc |
13400145 |
T |
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| Q |
312 |
atttccgagttagatgttctagc |
334 |
Q |
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||||||||||||||||||||||| |
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| T |
13400146 |
atttccgagttagatgttctagc |
13400168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 8e-43; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 39 - 179
Target Start/End: Original strand, 4026996 - 4027136
Alignment:
| Q |
39 |
ttaacagatatatgttccttcgatttcatgctgccacttatgcttttatagataaagtttcaatacaaattcaaatatcagtttcttggtccaaaactaa |
138 |
Q |
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| T |
4026996 |
ttaacaaatatatgtacctttgatttcatgctgcaacttatgtttttatagataaagttgcaatacaaattcatatatcagtttcttggtccaaaattaa |
4027095 |
T |
|
| Q |
139 |
actccaattaacaaaattcaagtagaaacaaaaaatgtata |
179 |
Q |
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| T |
4027096 |
actccaattaaccaaattcagctagaaataaaaaatatata |
4027136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 239 - 331
Target Start/End: Complemental strand, 3951661 - 3951569
Alignment:
| Q |
239 |
ttatactataactgattgagtagcagcacatatttcacatacattatttataccaaagtcccataatggccgcatttccgagttagatgttct |
331 |
Q |
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||||||||||| || |||||||||| | ||| |||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
3951661 |
ttatactataaatgggtgagtagcagaatgtatctcacatacatgacttataccgaagtcccataatggccgcatttccgagttagatgttct |
3951569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 90 - 174
Target Start/End: Original strand, 4004131 - 4004214
Alignment:
| Q |
90 |
ataaagtttcaatacaaattcaaatatcagtttcttggtccaaaactaaactccaattaacaaaattcaagtagaaacaaaaaat |
174 |
Q |
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| T |
4004131 |
ataaagttgcaaaacaaattcacatatcagttt-ttggtccaaaattaaattccaattaactaaagtcaactagaaacaaaaaat |
4004214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 90 - 173
Target Start/End: Complemental strand, 3951852 - 3951769
Alignment:
| Q |
90 |
ataaagtttcaatacaaattcaaatatcagtttcttggtccaaaactaaactccaattaacaaaattcaagtagaaacaaaaaa |
173 |
Q |
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| T |
3951852 |
ataaagttgcaatacaaagtcacatatcagtttcttggtccagaatgaaactccgattaaccaaattcaacaagaaacaaaaaa |
3951769 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 90 - 156
Target Start/End: Original strand, 4012792 - 4012858
Alignment:
| Q |
90 |
ataaagtttcaatacaaattcaaatatcagtttcttggtccaaaactaaactccaattaacaaaatt |
156 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||||||||||||| | ||||| ||||||| ||||| |
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| T |
4012792 |
ataaagttgcaatacaaattcacatatcagtttcttggtccaaaattcaactcaaattaaccaaatt |
4012858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 257 - 334
Target Start/End: Original strand, 3990103 - 3990180
Alignment:
| Q |
257 |
agtagcagcacatatttcacatacattatttataccaaagtcccataatggccgcatttccgagttagatgttctagc |
334 |
Q |
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||||||||||||| | |||||||||| |||||| ||| |||||||||||||||||||||| | |||||| ||||||| |
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| T |
3990103 |
agtagcagcacatttctcacatacatgatttatgccagagtcccataatggccgcatttcaaatttagattttctagc |
3990180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 240 - 334
Target Start/End: Original strand, 4012917 - 4013011
Alignment:
| Q |
240 |
tatactataactgattgagtagcagcacatatttcacatacattatttataccaaagtcccataatggccgcatttccgagttagatgttctagc |
334 |
Q |
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|||||||||| || |||||||| ||||||||||||||||||| | | |||| | ||||||||||| |||||||||| |||||| ||| ||||| |
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| T |
4012917 |
tatactataaatggatgagtagccgcacatatttcacatacatgaataatactagagtcccataatcgccgcatttctaagttagctgtcctagc |
4013011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 334
Target Start/End: Original strand, 4004483 - 4004597
Alignment:
| Q |
220 |
aagagtcttcactgaacttttatactataactgattgagtagcagcacatatttcacatacattatttataccaaagtcccataatggccgcatttccga |
319 |
Q |
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||||||||| |||||| || |||||||| || |||||| ||||||||||||||||||||| |||| ||||| || | | |||||||| ||||||| |
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| T |
4004483 |
aagagtcttaactgaatttcaatactatatatggatgagtaccagcacatatttcacatacatgatttgtaccagaggctcggaatggccgtgtttccga |
4004582 |
T |
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| Q |
320 |
gttagatgttctagc |
334 |
Q |
| |
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||| |||||||||| |
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| T |
4004583 |
attatatgttctagc |
4004597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 255 - 334
Target Start/End: Original strand, 4027231 - 4027310
Alignment:
| Q |
255 |
tgagtagcagcacatatttcacatacattatttataccaaagtcccataatggccgcatttccgagttagatgttctagc |
334 |
Q |
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|||||||||| ||||| ||||||||||| |||| ||| | ||| ||| ||||| |||||||| |||||||| ||||||| |
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| T |
4027231 |
tgagtagcagaacatacttcacatacatgatttgtacaagagtaccaaaatggacgcatttcgaagttagattttctagc |
4027310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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