View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4789_low_18 (Length: 354)
Name: NF4789_low_18
Description: NF4789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4789_low_18 |
 | |
|
| [»] scaffold0386 (2 HSPs) |
| | |
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Alignment Details
Target: scaffold0386 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: scaffold0386
Description:
Target: scaffold0386; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 1025 - 695
Alignment:
| Q |
1 |
tattaaaatagttagttttaataactttgcatttggaaattcaaatctcttgaaatgttgaaattttctcttccatgagttgagatatggtggctgaatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1025 |
tattaaaatagttagttttaataactttgcatttggaaattcaaatctcttgaaatgttgaaattttctcttccatgagttgagatatggtggctgaatg |
926 |
T |
|
| Q |
101 |
nnnnnnnaaggttgatgaacatgttcctagattttcacaaacactattagagaaatataaaacaagaacatagattcagtttatgagcgattcaaaataa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
925 |
tttttttaaggttgatgaacatgttcctagattttcacaaacactattaaagaaatataaaacaagaacatagattcagtttatgagcgattcaaaataa |
826 |
T |
|
| Q |
201 |
aacatgatctataccacgttgcaaaaggatgacgatggttctgtttctattttcatttgttttaaatnnnnnnntaataatgatatgtcatgattttatt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||| |
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|
| T |
825 |
gacatgatctataccacgttgcaaaaggatgacgatggttctgtttctattttcattttttttaaataaaaaaa-aataatgatatgtcatgatttcatt |
727 |
T |
|
| Q |
301 |
ggatgtttgtaagtgccacaggttctgtacgt |
332 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||| |
|
|
| T |
726 |
ggatgtttgtaagtgccacatgttatgtacgt |
695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0386; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 332
Target Start/End: Original strand, 1284 - 1330
Alignment:
| Q |
286 |
tgtcatgattttattggatgtttgtaagtgccacaggttctgtacgt |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| ||| ||||||| |
|
|
| T |
1284 |
tgtcatgattttattggatgtttgtaagtgtcacatgttatgtacgt |
1330 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 33878928 - 33879249
Alignment:
| Q |
1 |
tattaaaatagttagttttaataactttgcatttggaaattcaaatctcttgaaatgttgaaattttctcttccatgagttgagatatggtggctgaatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33878928 |
tattaaaatagttagttttaataactttgcatttggaaattcaaatctcttgaaatgttgaaattttctcttccatgagttgagatatggtggctgaatg |
33879027 |
T |
|
| Q |
101 |
nnnnnnnaaggttgatgaacatgttcctagattttcacaaacactattagagaaatataaaacaagaacatagattcagtttatgagcgattcaaaataa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33879028 |
tttttttaaggttgatgaacatgttcctagattttcacaaacactattaaagaaatataaaacaagaacatagattcagtttatgagcgattcaaaataa |
33879127 |
T |
|
| Q |
201 |
aacatgatctataccacgttgcaaaaggatgacgatggttctgtttctattttcatttgttttaaatnnnnnnntaataatgatatgtcatgattttatt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||| ||||| ||| |
|
|
| T |
33879128 |
gacatgatctataccacgttgcaaaaggatgacgatggttctgtttctattttcattttttttta----------tataatgatatgtcacgatttcatt |
33879217 |
T |
|
| Q |
301 |
ggatgtttgtaagtgccacaggttctgtacgt |
332 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||| |
|
|
| T |
33879218 |
ggatgtttgtaagtgccacatgttatgtacgt |
33879249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 332
Target Start/End: Complemental strand, 33878669 - 33878623
Alignment:
| Q |
286 |
tgtcatgattttattggatgtttgtaagtgccacaggttctgtacgt |
332 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
33878669 |
tgtcatgatttcattggatgtttgtaagtgccacatgttatgtacgt |
33878623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 27641144 - 27641463
Alignment:
| Q |
1 |
tattaaaatagttagttttaataactttgcatttggaaattcaaatctcttgaaatgttgaaattttctcttccatgagttgagatatggtggctgaatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
27641144 |
tattaaaatagttagttttaataactttgcatttggaaattcagatctcttgaaaggttgaaattttctcttccatgagttgacatatggtgggtgaatg |
27641243 |
T |
|
| Q |
101 |
nnnnnnnaaggttgatgaacatgttcctagattttcacaaacactattagagaaatataaaacaagaacatagattcagtttatgagcgattcaaaataa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27641244 |
tttttttaaggttgatgaacatgttcctagattttcagaaacactaatagagaaatataaaacaagaacatagattcagtttatgagcgattcaaaataa |
27641343 |
T |
|
| Q |
201 |
aacatgatctataccacgttgcaaaaggatgacgatggttctgtttctattttcatttgttttaaatnnnnnnntaataatgatatgtcatgattttatt |
300 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||| ||| |
|
|
| T |
27641344 |
gacatgatctataccacgatgcaaaaggatgacgatggttctgtttctattttcatttttttttaaattaaaaaaaataatgatatgtcatgatttcatt |
27641443 |
T |
|
| Q |
301 |
ggatgtttgtaagtgccaca |
320 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
27641444 |
gaatgtttgtaagtgccaca |
27641463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 13869548 - 13869871
Alignment:
| Q |
1 |
tattaaaatagttagttttaataactttgcatttggaaattcaaatctcttgaaatgttgaaattttctcttccatgagttgagatatggtggctgaatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13869548 |
tattaaaatagttagttttaataactttgcatttggaaattcagatctcttgaaaggttgaaattttctcttccatgagttgagatatggtggctgaatg |
13869647 |
T |
|
| Q |
101 |
nnnnnnnaaggttgatgaacatgttcctagattttcacaaacactattagagaaatataaaacaagaacatagattcagtttatgagcgattcaaaataa |
200 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13869648 |
tttttttaaggtt-------atgttcctagattttcagaaacactaatagagaaatataaaacaagaacatagattcagtttatgagcgattcaaaataa |
13869740 |
T |
|
| Q |
201 |
aacatgatctataccacgttgcaaaaggatgacgatggttctgtttctattttcatttgttttaaatnnnnnnntaataatgatatgtcatgattttatt |
300 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||| |
|
|
| T |
13869741 |
gacatgatctataccacgatgcaaaaggatgacgatggttctgtttctattttcattttttttaaattaaaaaa-aataatgatatgtcatgatttcatt |
13869839 |
T |
|
| Q |
301 |
ggatgtttgtaagtgccacaggttctgtacgt |
332 |
Q |
| |
|
| |||||||||||||||||| ||| ||||||| |
|
|
| T |
13869840 |
gaatgtttgtaagtgccacatgttatgtacgt |
13869871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 286 - 331
Target Start/End: Complemental strand, 13869285 - 13869240
Alignment:
| Q |
286 |
tgtcatgattttattggatgtttgtaagtgccacaggttctgtacg |
331 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| ||| |||||| |
|
|
| T |
13869285 |
tgtcatgatttcattggatgtttgtaagtgccacatgttatgtacg |
13869240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 286 - 331
Target Start/End: Complemental strand, 27640920 - 27640875
Alignment:
| Q |
286 |
tgtcatgattttattggatgtttgtaagtgccacaggttctgtacg |
331 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| ||| |||||| |
|
|
| T |
27640920 |
tgtcatgatttcattggatgtttgtaagtgccacatgttatgtacg |
27640875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 29735458 - 29735123
Alignment:
| Q |
1 |
tattaaaatagttagttttaataacttt------gcatttggaaattcaaatctcttgaaatgttgaaattttctcttccatgagttgagatatggtggc |
94 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29735458 |
tattaaaatagttagttttaataactttttgtatgcatttggaaattcagatctcttaaaaggttgaaattttctcttccatgagttgagatatggtggc |
29735359 |
T |
|
| Q |
95 |
tgaatgnnnnnnnaaggttgatgaacatgttcctagattttcacaaacactattagagaaatataaaacaagaacatagattcagtttatgagcgattca |
194 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
29735358 |
tgaatgtttttttaaggttgatgaacatgttcctagattttcataaacactattagagaaatattaaacaagaacatagattcagtttatgagcgattca |
29735259 |
T |
|
| Q |
195 |
aaataaaacatgatctataccacgttgcaaaaggatgacgatggttctgtttctattttc--atttgttttaaatnnnnnnntaataatgatatgtcatg |
292 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||| |||||||| |||||||||||||||| |
|
|
| T |
29735258 |
aaataagacatgatctataccacgatgcaaaagaatgacgatggttctgtttctattttcatattttttttaaattaaaaaa-aataatgatatgtcata |
29735160 |
T |
|
| Q |
293 |
attttattggatgtttgtaagtgccacaggttctgta |
329 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
29735159 |
attttattggatgtttgtaagtgccacatgttatgta |
29735123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 49851171 - 49850838
Alignment:
| Q |
1 |
tattaaaatagttagttttaataactttgcatttggaaattcaaatctcttgaaatgttgaaattttctcttccatgagttgagatatggtggctgaatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
49851171 |
tattaaaatagttagttttaataactttgcatttggaaattcagatctcttaaaaggttgaaattttctcttccatgagttgagatatgatggccgaatg |
49851072 |
T |
|
| Q |
101 |
nnnnnnnaaggttgat---gaacatgttcctagattttcacaaacactattagagaaatataaaacaagaacatagattcagtttatgagcgattcaaaa |
197 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49851071 |
tttttttaaggttgatattgaacatgttcctagattttcagaaatactattagagaaatataaaacaagaacatagattcagtttatgagcgattcaaaa |
49850972 |
T |
|
| Q |
198 |
taaaacatgatctataccacgttgcaaaaggatgacgatggttctgtttctattttcatttgttttaaatnnnnnnntaataatgatatgtcatgatttt |
297 |
Q |
| |
|
||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||| ||| | ||||||||||||||||||| |
|
|
| T |
49850971 |
taagacatgatctataccacgatgcaaaaggatgacgatggttatgtttctattttcatttttttttaattaaaaaa-agtaatgatatgtcatgatttc |
49850873 |
T |
|
| Q |
298 |
attggatgtttgtaagtgccacaggttctgtacgt |
332 |
Q |
| |
|
|||| |||||||||||||||||| ||| ||||||| |
|
|
| T |
49850872 |
attgaatgtttgtaagtgccacatgttatgtacgt |
49850838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 152 - 332
Target Start/End: Original strand, 38460745 - 38460926
Alignment:
| Q |
152 |
gaaatataaaacaagaacatagattcagtttatgagcgattcaaaataaaacatgatctataccacgttgcaaaaggatgacgatggttctgtttctatt |
251 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38460745 |
gaaatataaaacaagaacatagatttagtttatgagcgattcaaaataagacatgatctataccacgttgcaaaaggatgacgatggttctgtttctatt |
38460844 |
T |
|
| Q |
252 |
ttca-tttgttttaaatnnnnnnntaataatgatatgtcatgattttattggatgtttgtaagtgccacaggttctgtacgt |
332 |
Q |
| |
|
|||| ||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
38460845 |
ttcatttttttttaaattaaaaataaataatgatatgtcatgatttcattggatgtttgtaagtgccacatgttatgtacgt |
38460926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 38460700 - 38460749
Alignment:
| Q |
15 |
gttttaataactttgcatttggaaattcaaatctcttgaaatgttgaaat |
64 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
38460700 |
gttttaataactttgcatttggaaattcaaatctcttgaaaggttgaaat |
38460749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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