View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4789_low_19 (Length: 353)

Name: NF4789_low_19
Description: NF4789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4789_low_19
NF4789_low_19
[»] scaffold0386 (3 HSPs)
scaffold0386 (1-234)||(1001-1234)
scaffold0386 (280-331)||(1279-1330)
scaffold0386 (285-331)||(695-741)
[»] chr4 (4 HSPs)
chr4 (1-234)||(33878719-33878952)
chr4 (280-331)||(33878623-33878674)
chr4 (122-161)||(46673679-46673718)
chr4 (285-331)||(33879203-33879249)
[»] chr5 (6 HSPs)
chr5 (1-234)||(13869339-13869572)
chr5 (78-234)||(27640973-27641129)
chr5 (280-330)||(13869240-13869290)
chr5 (280-330)||(27640875-27640925)
chr5 (285-331)||(13869825-13869871)
chr5 (285-331)||(27641429-27641475)
[»] chr7 (3 HSPs)
chr7 (1-234)||(29735434-29735661)
chr7 (124-161)||(8720808-8720845)
chr7 (280-327)||(29735710-29735759)
[»] chr8 (4 HSPs)
chr8 (58-234)||(38460526-38460702)
chr8 (285-331)||(38460880-38460926)
chr8 (280-331)||(38460430-38460481)
chr8 (122-161)||(44428119-44428158)
[»] chr3 (3 HSPs)
chr3 (1-234)||(49851147-49851369)
chr3 (280-328)||(49851417-49851465)
chr3 (285-331)||(49850838-49850884)


Alignment Details
Target: scaffold0386 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 1001 - 1234
Alignment:
Q  1 gttattaaaactaactattttaatataatttgacccattgctcgattggattgcaataacacccaatacagcatggtttagaaacaatctctgcatgatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1001 gttattaaaactaactattttaatataatttgacccattgctcgattggattgcaataacacccaatacagcatggtttagaaacaatctctgcatgatt 1100  T
Q  101 tggatccgttaattatggtgttgcaatgagtagtggatgagccataaccatcttcacaatttaaacaacaagagaagtttggagtttctagaattattcc 200  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1101 tggatccgttaattatggtgttgcaatgagtagtcgatgagccataaccatcttcacaatttaaacaacaagagaagtttggagtttctagaattattcc 1200  T
Q  201 acaggtttaagcaaagagaagagaaagaaaactc 234  Q
    ||||||||||||||||||||||||||||||||||    
T  1201 acaggtttaagcaaagagaagagaaagaaaactc 1234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 280 - 331
Target Start/End: Original strand, 1279 - 1330
Alignment:
Q  280 tgacctgtcatgatttcattggatgtttgtaattgtcacatgttatgtacgt 331  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  1279 tgacctgtcatgattttattggatgtttgtaagtgtcacatgttatgtacgt 1330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 285 - 331
Target Start/End: Complemental strand, 741 - 695
Alignment:
Q  285 tgtcatgatttcattggatgtttgtaattgtcacatgttatgtacgt 331  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||    
T  741 tgtcatgatttcattggatgtttgtaagtgccacatgttatgtacgt 695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 33878952 - 33878719
Alignment:
Q  1 gttattaaaactaactattttaatataatttgacccattgctcgattggattgcaataacacccaatacagcatggtttagaaacaatctctgcatgatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  33878952 gttattaaaactaactattttaatataatttgacccattgctcgattggattgcaataacacccaatacagcatggtttagaaacaatctccgcatgatt 33878853  T
Q  101 tggatccgttaattatggtgttgcaatgagtagtggatgagccataaccatcttcacaatttaaacaacaagagaagtttggagtttctagaattattcc 200  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33878852 tggatccgttaattatggtgttgcaatgagtagtcgatgagccataaccatcttcacaatttaaacaacaagagaagtttggagtttctagaattattcc 33878753  T
Q  201 acaggtttaagcaaagagaagagaaagaaaactc 234  Q
    ||||||||||||||||||||||||||||||||||    
T  33878752 acaggtttaagcaaagagaagagaaagaaaactc 33878719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 280 - 331
Target Start/End: Complemental strand, 33878674 - 33878623
Alignment:
Q  280 tgacctgtcatgatttcattggatgtttgtaattgtcacatgttatgtacgt 331  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  33878674 tgacctgtcatgatttcattggatgtttgtaagtgccacatgttatgtacgt 33878623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 122 - 161
Target Start/End: Complemental strand, 46673718 - 46673679
Alignment:
Q  122 tgcaatgagtagtggatgagccataaccatcttcacaatt 161  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  46673718 tgcaatgagtagtggatgagtcataaccatcttcacaatt 46673679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 331
Target Start/End: Original strand, 33879203 - 33879249
Alignment:
Q  285 tgtcatgatttcattggatgtttgtaattgtcacatgttatgtacgt 331  Q
    ||||| ||||||||||||||||||||| || ||||||||||||||||    
T  33879203 tgtcacgatttcattggatgtttgtaagtgccacatgttatgtacgt 33879249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 13869572 - 13869339
Alignment:
Q  1 gttattaaaactaactattttaatataatttgacccattgctcgattggattgcaataacacccaatacagcatggtttagaaacaatctctgcatgatt 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  13869572 gttattaaaactaactattttaatagaatttgacccattgctcgattggattgcaataacacccaatacagcatgatttagaaacaatctctacatgatt 13869473  T
Q  101 tggatccgttaattatggtgttgcaatgagtagtggatgagccataaccatcttcacaatttaaacaacaagagaagtttggagtttctagaattattcc 200  Q
    |||||||||||||||||||||| ||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  13869472 tggatccgttaattatggtgttacaatgagcagtggatgagacataaccatcttcataatttaaacaacaagagaagtttggcgtttctagaattattcc 13869373  T
Q  201 acaggtttaagcaaagagaagagaaagaaaactc 234  Q
    || |||||||||||||||||||||||||||||||    
T  13869372 accggtttaagcaaagagaagagaaagaaaactc 13869339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 78 - 234
Target Start/End: Complemental strand, 27641129 - 27640973
Alignment:
Q  78 ttagaaacaatctctgcatgatttggatccgttaattatggtgttgcaatgagtagtggatgagccataaccatcttcacaatttaaacaacaagagaag 177  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||| ||||||||||||||||||||    
T  27641129 ttagaaacaatctctacatgatttggatccgttaattatggtgttacaatgagcagtggatgagacataaccatcttcataatttaaacaacaagagaag 27641030  T
Q  178 tttggagtttctagaattattccacaggtttaagcaaagagaagagaaagaaaactc 234  Q
    ||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  27641029 tttggcgtttctagaattattccaccagtttaagcaaagagaagagaaagaaaactc 27640973  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 280 - 330
Target Start/End: Complemental strand, 13869290 - 13869240
Alignment:
Q  280 tgacctgtcatgatttcattggatgtttgtaattgtcacatgttatgtacg 330  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||||    
T  13869290 tgacctgtcatgatttcattggatgtttgtaagtgccacatgttatgtacg 13869240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 280 - 330
Target Start/End: Complemental strand, 27640925 - 27640875
Alignment:
Q  280 tgacctgtcatgatttcattggatgtttgtaattgtcacatgttatgtacg 330  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||||    
T  27640925 tgacctgtcatgatttcattggatgtttgtaagtgccacatgttatgtacg 27640875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 331
Target Start/End: Original strand, 13869825 - 13869871
Alignment:
Q  285 tgtcatgatttcattggatgtttgtaattgtcacatgttatgtacgt 331  Q
    |||||||||||||||| |||||||||| || ||||||||||||||||    
T  13869825 tgtcatgatttcattgaatgtttgtaagtgccacatgttatgtacgt 13869871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 331
Target Start/End: Original strand, 27641429 - 27641475
Alignment:
Q  285 tgtcatgatttcattggatgtttgtaattgtcacatgttatgtacgt 331  Q
    |||||||||||||||| |||||||||| || |||||| |||||||||    
T  27641429 tgtcatgatttcattgaatgtttgtaagtgccacatgatatgtacgt 27641475  T

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Target: chr7 (Bit Score: 167; Significance: 2e-89; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 29735434 - 29735661
Alignment:
Q  1 gttattaaaactaactattttaatataatttgacccattgctcgattggattgcaataacacccaatacagcatggtttagaaacaatctctgcatgatt 100  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  29735434 gttattaaaactaactattttaatagaatttaacccattgctcgattggattgcaataacacccaatacagtatggtttagaaacaatctctacatgatt 29735533  T
Q  101 tggatccgttaattatggtgttgcaatgagtagtggatgagccataaccatcttcacaatttaaacaacaagagaagtttggagtttctagaattattcc 200  Q
    |||||||||||||||||||||||||||||      |||||| |||||||||||||||||||||||||||||||| | |||||  ||| ||||||||||||    
T  29735534 tggatccgttaattatggtgttgcaatga------gatgagacataaccatcttcacaatttaaacaacaagaggaatttggcatttttagaattattcc 29735627  T
Q  201 acaggtttaagcaaagagaagagaaagaaaactc 234  Q
    || |||||||||||||||||||||||||||||||    
T  29735628 accggtttaagcaaagagaagagaaagaaaactc 29735661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 124 - 161
Target Start/End: Complemental strand, 8720845 - 8720808
Alignment:
Q  124 caatgagtagtggatgagccataaccatcttcacaatt 161  Q
    |||||||||||||||||| |||||||||||||||||||    
T  8720845 caatgagtagtggatgagacataaccatcttcacaatt 8720808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 327
Target Start/End: Original strand, 29735710 - 29735759
Alignment:
Q  280 tgacctgtcatgatttcattgg--atgtttgtaattgtcacatgttatgt 327  Q
    ||||||||||||||||||||||  |||||||||| || ||||||||||||    
T  29735710 tgacctgtcatgatttcattggatatgtttgtaagtgccacatgttatgt 29735759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 153; Significance: 5e-81; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 58 - 234
Target Start/End: Complemental strand, 38460702 - 38460526
Alignment:
Q  58 aacacccaatacagcatggtttagaaacaatctctgcatgatttggatccgttaattatggtgttgcaatgagtagtggatgagccataaccatcttcac 157  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  38460702 aacacccaatacaacatggtttagaaacaatctctgcatgatttggatccgttaattatggtgttgcaatgagcagtggatgagacataaccatcttcac 38460603  T
Q  158 aatttaaacaacaagagaagtttggagtttctagaattattccacaggtttaagcaaagagaagagaaagaaaactc 234  Q
    ||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  38460602 aatttaaacaacaagagatatttggagtttctagacttattccacaggtttaagcaaagagaagagaaagaaaactc 38460526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 285 - 331
Target Start/End: Original strand, 38460880 - 38460926
Alignment:
Q  285 tgtcatgatttcattggatgtttgtaattgtcacatgttatgtacgt 331  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||    
T  38460880 tgtcatgatttcattggatgtttgtaagtgccacatgttatgtacgt 38460926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 280 - 331
Target Start/End: Complemental strand, 38460481 - 38460430
Alignment:
Q  280 tgacctgtcatgatttcattggatgtttgtaattgtcacatgttatgtacgt 331  Q
    |||||||| || |||||||||||||||||||| || ||||||||||||||||    
T  38460481 tgacctgtaataatttcattggatgtttgtaagtgccacatgttatgtacgt 38460430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 122 - 161
Target Start/End: Original strand, 44428119 - 44428158
Alignment:
Q  122 tgcaatgagtagtggatgagccataaccatcttcacaatt 161  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  44428119 tgcaatgagtagtggatgagacataaccatcttcacaatt 44428158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 124; Significance: 1e-63; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 49851147 - 49851369
Alignment:
Q  1 gttattaaaactaactattttaatataatttgacccattgctcgattggattgcaataa---cacccaatacagcatggtttagaaacaatctctgcatg 97  Q
    ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||   |||||||||||||||| |||||||||||||||| |||     
T  49851147 gttattaaaactaactattttaatagaatttgacccattgctcaattggattgcaataataacacccaatacagcatgatttagaaacaatctctacat- 49851245  T
Q  98 atttggatccgttaattatggtgttgcaatgagtagtggatgagccataaccatcttcacaatttaaacaacaagagaagtttggagtttctagaattat 197  Q
                 |||||||||||| |||| || |||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  49851246 -------------aattatggtgttacaataagcagtggatgagacataaccatcttcacaatttaaacaacaagggaagtttggcgtttctagaattat 49851332  T
Q  198 tccacaggtttaagcaaagagaagagaaagaaaactc 234  Q
    |||||  |||||||||||||||| |||||||||||||    
T  49851333 tccaccagtttaagcaaagagaaaagaaagaaaactc 49851369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 280 - 328
Target Start/End: Original strand, 49851417 - 49851465
Alignment:
Q  280 tgacctgtcatgatttcattggatgtttgtaattgtcacatgttatgta 328  Q
    |||||||| ||||||||||||||||||||||| || |||||||||||||    
T  49851417 tgacctgttatgatttcattggatgtttgtaagtgccacatgttatgta 49851465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 331
Target Start/End: Complemental strand, 49850884 - 49850838
Alignment:
Q  285 tgtcatgatttcattggatgtttgtaattgtcacatgttatgtacgt 331  Q
    |||||||||||||||| |||||||||| || ||||||||||||||||    
T  49850884 tgtcatgatttcattgaatgtttgtaagtgccacatgttatgtacgt 49850838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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