View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4789_low_2 (Length: 663)
Name: NF4789_low_2
Description: NF4789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4789_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 451; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 18 - 564
Target Start/End: Complemental strand, 50480923 - 50480376
Alignment:
| Q |
18 |
ctttcaacttcaacattatttccgttgactgaacccattagatcggtggttcctcttcgactcacaagcaataggggttgaacttgttcacactttg--- |
114 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
50480923 |
ctttcaacttcaacattatttccgtcgactgaacccattagatcggtggttcctcttcgactcacaagca---ggggttgaacttgttcacactttgatg |
50480827 |
T |
|
| Q |
115 |
gtgtgtggcgaagctcttcagctaaacaatcttgagcccgcatacattcttgtgaatcacattgtgttgttagcttcgttgccaactggagcgatgagta |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
50480826 |
gtgtgtggcgaagctcttcagctaaacaatcttgagctcgcatacatgcttgtgaatcgtattgtgttgtcagcttcgttgccaactggagcgatgagta |
50480727 |
T |
|
| Q |
215 |
aggttgctaagtattttgcgaaa-cttttgcttggagaatcaacagatttcagagaagaatattacttgagcttttatcggcttctccctatctcaaact |
313 |
Q |
| |
|
|||||||||||||||| ||| || |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
50480726 |
aggttgctaagtatttcgcggaagcttttgctcggagaatcaacagatttcagagaagaatattacatgagcttttatcggcttctccctatctcaaact |
50480627 |
T |
|
| Q |
314 |
cgctcacttgatcgctgatcaagctattctcaaagctttctgagagaacctaaaaccatgtttatgtcgaacctctgtttaaaaatttgttctcatttat |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
50480626 |
cgctcacttgatcgctgatcaagctattctcaaagctttctgagaaaacctaaaaccatgtttatgtcgaacctctctttaaaaatttgttctcatttat |
50480527 |
T |
|
| Q |
414 |
tagctaaagaggaaaaggaatagaaaataaacacaaggtttgatgtttccaaaggcttcctattttgtcgaagataactgaatgggatcgagcaagaaca |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
50480526 |
cagctaaagaggaaaaggaatagaaaataaacacaaggtttaatgtttccaaaggctttctattttgtcgaagataagtgaatgggatcgagcaagaaca |
50480427 |
T |
|
| Q |
514 |
aaacaatatgtatggtgaaaccatttttcttgtcaaatgaaaattatccaa |
564 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50480426 |
aaacaatatgtatggtgaaaccatttttcttgtcaaatgaaaattatccaa |
50480376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 516 - 651
Target Start/End: Complemental strand, 50480348 - 50480201
Alignment:
| Q |
516 |
acaatatgtatggtgaaaccatttttcttgtcaaatgaaaattatccaa------------acaaagaaataacttcatgaataaattaattgtgttatg |
603 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50480348 |
acaatatgtatggtgaaaccatttttcttgtcaaatgaaaattatccaatacttataaagaacaaagaaataacttcatgaataaattaattgtgttatg |
50480249 |
T |
|
| Q |
604 |
tcattgtcagacttataaagaaacaacttctcgaaattttcatgatga |
651 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50480248 |
aaattgtcagacttataaagaaacaacttctcgaaattttcatgatga |
50480201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University