View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4789_low_26 (Length: 287)
Name: NF4789_low_26
Description: NF4789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4789_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 5253874 - 5254158
Alignment:
| Q |
1 |
aaagagacaatatgtttttgacaataattaaaaatggggaaattgatcccaacaaaagaaaatattcataaatagttctttcatcttagaaccaaannnn |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5253874 |
aaagagacaatatgtttttgacaataattaaaaatggggaaattgatcctaacaaaagaaaatattcataaatagttctttcatcttagaaccaaaaaaa |
5253973 |
T |
|
| Q |
101 |
nnnnnnnnnnnnnn---gaatgtaaaagaagaaaagaacatgagctattgatttaagaaaaaattgttcatttttaattattttcagggatcaaattgtc |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
5253974 |
aaaaaaaatgattttttgaatgtaaaagaagaaaagaacatgagctattgatttaaaaaaaaattgttcatttttaattattttcagggatcgaattgtc |
5254073 |
T |
|
| Q |
198 |
cctttttaattatttacgaaggcaattgtccatatttttctcattatgcctacaaatatgagcacaagtcactcattcatctcac |
282 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
5254074 |
cctttttaattatttacgaagacaattgtccatatttttctcattatgcctacaaatatgagcacaagtcacacattcatttcac |
5254158 |
T |
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