View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4789_low_29 (Length: 252)
Name: NF4789_low_29
Description: NF4789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4789_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 16 - 238
Target Start/End: Original strand, 2852713 - 2852935
Alignment:
| Q |
16 |
atcacacactgtaattttgttcgtactaaatttacaggttttgctcagctagaacttgaattacatagtcactgcacattgagaatgtctcaactattgt |
115 |
Q |
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|||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2852713 |
atcacacactgttattttgtttgtactaaatttacaggttttgctcagctagaacttgaattacatagtcactgcacattgagaatgtctcaactattgt |
2852812 |
T |
|
| Q |
116 |
tacactgaactgttagcaatacttgttggcaaatggttagagaaataaatttctgtgttagttttgttttttaagtaatcaatgtacaactcctccaaaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2852813 |
tacactgaactgttagcaatacttgttggcaaatggttagagaaataaatttctgtgttagttttgttttttaagtaatcaatgtacaactcctccaaaa |
2852912 |
T |
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| Q |
216 |
gtaatcatgtacaatgaattttt |
238 |
Q |
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||||||||||||||||||||||| |
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| T |
2852913 |
gtaatcatgtacaatgaattttt |
2852935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 16 - 238
Target Start/End: Original strand, 2904745 - 2904967
Alignment:
| Q |
16 |
atcacacactgtaattttgttcgtactaaatttacaggttttgctcagctagaacttgaattacatagtcactgcacattgagaatgtctcaactattgt |
115 |
Q |
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|||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2904745 |
atcacacactgttattttgtttgtactaaatttacaggttttgctcagctagaacttgaattacatagtcactgcacattgagaatgtctcaactattgt |
2904844 |
T |
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| Q |
116 |
tacactgaactgttagcaatacttgttggcaaatggttagagaaataaatttctgtgttagttttgttttttaagtaatcaatgtacaactcctccaaaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2904845 |
tacactgaactgttagcaatacttgttggcaaatggttagagaaataaatttctgtgttagttttgttttttaagtaatcaatgtacaactcctccaaaa |
2904944 |
T |
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| Q |
216 |
gtaatcatgtacaatgaattttt |
238 |
Q |
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||||||||||||||||||||||| |
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| T |
2904945 |
gtaatcatgtacaatgaattttt |
2904967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 41 - 239
Target Start/End: Original strand, 42951120 - 42951307
Alignment:
| Q |
41 |
ctaaatttacaggttttgctcagctagaacttgaattacatagtcactgcacattgagaatgtctcaactattgttacactgaactgttagcaatacttg |
140 |
Q |
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||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |
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| T |
42951120 |
ctaaatttacaagttttgctcagctagaacgtgaattacattgtcactgcacattgagaatgtctcaactattgttacgttgaactgttggcaatact-- |
42951217 |
T |
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| Q |
141 |
ttggcaaatggttagagaaataaatttctgtgttagttttgttttttaagtaatcaatgtacaactcctccaaaagtaatcatgtacaatgaatttttt |
239 |
Q |
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||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
42951218 |
---------ggttagataaataaatttctgagttagttttgttttttaagtaatcaatgtacaactcctcaaaaagtaatcatgtacaatgaatttttt |
42951307 |
T |
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