View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4789_low_30 (Length: 249)
Name: NF4789_low_30
Description: NF4789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4789_low_30 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 6 - 249
Target Start/End: Complemental strand, 8865748 - 8865505
Alignment:
| Q |
6 |
aagcaaaggtgaatctgtaaatttactaactgctacatgccatgtagctacaccatcaggaacttgtgaaagtcctgctatgttgatcaaatcttctggt |
105 |
Q |
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| T |
8865748 |
aagcaaaggtgaatctgtaaatttactaactgctacatgccatgtagctacaccatcaggaacttgtgaaagtcctgctatgttgatcaaatcttctggt |
8865649 |
T |
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| Q |
106 |
gcaattttcattgcttttccgattttttcgcctgtgacaggatcaagtggttctctataccaaattgctgagaagtttccatgaagtgttttatcatccc |
205 |
Q |
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| T |
8865648 |
gcaattttcattgcttttccgattttttcgcctgtgacaggatcaagtggttctctataccaaattgctgagaagtttccatgaagtgttttatcatccc |
8865549 |
T |
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| Q |
206 |
aagcttgatgagttgaaatggacttgagcatgtttgaggttgtt |
249 |
Q |
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| T |
8865548 |
aagcttgatgagttgaaatggacttgagcatgtttgaggttgtt |
8865505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 152
Target Start/End: Original strand, 31863211 - 31863266
Alignment:
| Q |
97 |
tcttctggtgcaattttcattgcttttccgattttttcgcctgtgacaggatcaag |
152 |
Q |
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| T |
31863211 |
tcttctggtgcaatcttcattgcttttccaattttctcgccattgacaggatcaag |
31863266 |
T |
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