View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4789_low_35 (Length: 239)
Name: NF4789_low_35
Description: NF4789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4789_low_35 |
 | |
|
| [»] chr5 (3 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 24 - 239
Target Start/End: Original strand, 8865280 - 8865495
Alignment:
| Q |
24 |
cacttatcatcctaaacaatttttgttatacatgtcctgcttttatttgtggcagctatatgaagcaatgagggcagtaacatggtcactatttgctagt |
123 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8865280 |
cacttatcatcctaaccaatttttgttatacatgtcctgcttttatttgtggcagctatatgaagcaatgagggcagtaacatggtcactatttgctagt |
8865379 |
T |
|
| Q |
124 |
agaaaagcactaaactcaataacaatcaattacaagaatggatttgttcaagcattccatagagatctaaaagataacaacacattttacatctactcag |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8865380 |
agaaaagcactaaactcaataacaatcaattacaagaatggatttgttcaagcattccatagagatctaaaagataacaacacattttacatctactcag |
8865479 |
T |
|
| Q |
224 |
atctttctaattactc |
239 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
8865480 |
atctttctaattactc |
8865495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 111
Target Start/End: Complemental strand, 40558533 - 40558476
Alignment:
| Q |
54 |
catgtcctgcttttatttgtggcagctatatgaagcaatgagggcagtaacatggtca |
111 |
Q |
| |
|
|||||| ||||||||||||| || ||||||||||||| ||||||||||||||||||| |
|
|
| T |
40558533 |
catgtcttgcttttatttgtatcatctatatgaagcaacgagggcagtaacatggtca |
40558476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 239
Target Start/End: Complemental strand, 40558468 - 40558411
Alignment:
| Q |
182 |
atagagatctaaaagataacaacacattttacatctactcagatctttctaattactc |
239 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||| |||| |||| |||||||| |
|
|
| T |
40558468 |
atagagatctaaaagataagaacacattttccatctaccaagatttttcaaattactc |
40558411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University