View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4789_low_38 (Length: 235)
Name: NF4789_low_38
Description: NF4789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4789_low_38 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 13 - 235
Target Start/End: Complemental strand, 2833932 - 2833710
Alignment:
| Q |
13 |
actttttcccttacctaaaaaagcaaatttcatcaacttattaatttaaacaaagttattaatttccacttcaatatatactttcacacgaggcatgcaa |
112 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2833932 |
actttttcccttacctaaaaaagcaaatttcaccaacttattaatttaaacaaagttattaatttccacttcaatatatactttcacacgaggcatgcaa |
2833833 |
T |
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| Q |
113 |
gtactttttatgtgtcattgaaataacgttgttggaaactgagacaaaaacataacatcaaaccttaatatcacaaacaaacataagatctcttgttttc |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2833832 |
gtactttttatgtgtcattgaaataacgttgttggaaactgagacaaaaacataacatcaaaccttaatatcacaaacaaacataagatctcttgttttg |
2833733 |
T |
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| Q |
213 |
ttcttagtttcctaactcgttct |
235 |
Q |
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||||||||||| ||||||||||| |
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| T |
2833732 |
ttcttagtttcataactcgttct |
2833710 |
T |
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