View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4789_low_4 (Length: 508)
Name: NF4789_low_4
Description: NF4789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4789_low_4 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 21 - 364
Target Start/End: Original strand, 22684545 - 22684888
Alignment:
| Q |
21 |
tttcatcagaagtgtaagtgcaatagagcaacgcacaaaggtagtaataatagtatggacaatacttaccaaaatatggaaaagagagggccacaaataa |
120 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22684545 |
tttcatcagaagtgtaagtgcaacagagcaacgcacaaaggtagtaataatagtatggacaatacttaccaaaatatggaaaagagagggccacaaataa |
22684644 |
T |
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| Q |
121 |
acttgaaaacactaaagttgttctgataaaaagagacatagcataacatcttagcctaggagaagggacgacaagttcctctatgcttgatgcaacaggc |
220 |
Q |
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|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22684645 |
acttgaaaacactaaagttgttttaataaaaagagacatagcataacatcttagcctaggagaagggacgacaagttcctctatgcttgatgcaacaggc |
22684744 |
T |
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| Q |
221 |
aataatattaaggcaatttttgccaaaggagtcacaacctataaataaaacaaaacacataaatttgttaaaatgtgtcatctatgtgataaaacatgaa |
320 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
22684745 |
aataatattaaggcaaattttgccaaaggagtcacaacctataaataaaacaaaacacagaaatttgttaaaatgtgtcatctatgtgataaaacatgaa |
22684844 |
T |
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| Q |
321 |
tttaaagtcaagaaaaaaggaacaaggagattaattttgttttc |
364 |
Q |
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| T |
22684845 |
tttaaagtcaagaaaaaaggaacaaggagattaattttgatttc |
22684888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 47 - 327
Target Start/End: Original strand, 22695870 - 22696146
Alignment:
| Q |
47 |
agcaacgcacaaaggtagtaataatagtatggacaatacttaccaaaatatggaaaagagagggccacaaataaacttgaaaacactaaagttgttctga |
146 |
Q |
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| T |
22695870 |
agcaatgcacaaaggtagtaataatggtatg-acaaaacttaccaaaatatggaaaagagagggccacaactaaacttgaaaccactaaagctgttctga |
22695968 |
T |
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| Q |
147 |
taaaaagagacatagcataacatcttagcctaggagaagggacgacaagttcctctatgcttgatgcaacaggcaataatattaaggcaatttttgccaa |
246 |
Q |
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| T |
22695969 |
tgagaatagacataggataacatcttagcctaggagaagggac---aagttcctctatgcttgatgcaataggcaataatgttaaggcatattttgccag |
22696065 |
T |
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| Q |
247 |
aggagtcacaacctataaataaaacaaaacacataaatttgttaaaatgtgtcatctatgtgataaaacatgaatttaaag |
327 |
Q |
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| T |
22696066 |
aggagtcacaacctatatgtaaaataaaacacagaaatttgttaaaatttgtcatctatgtgataaaacatgaatttaaag |
22696146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 128; Significance: 6e-66; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 358 - 489
Target Start/End: Original strand, 24493177 - 24493308
Alignment:
| Q |
358 |
tgttttccttggttattctacacaatatcactcttacatttgtctagaccgagccactcgaagagtgcatttatctcgtcatgttgtttttgttgaagac |
457 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24493177 |
tgttttccttggttattctacacaatatcactcttatatttgtctagaccgagccactcgaagagtgcatttatctcgtcatgttgtttttgttgaagac |
24493276 |
T |
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| Q |
458 |
cagtttcctttctcccatcaaaacccccaaac |
489 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
24493277 |
cagtttcctttctcccatcaaaacccccaaac |
24493308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 358 - 489
Target Start/End: Original strand, 92542 - 92673
Alignment:
| Q |
358 |
tgttttccttggttattctacacaatatcactcttacatttgtctagaccgagccactcgaagagtgcatttatctcgtcatgttgtttttgttgaagac |
457 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
92542 |
tgttttacttggttattctacacaatatcactcttacatttgtctagatcgagccactcgaagagtgcatttatctcgtcatgttgtttttgttgaagac |
92641 |
T |
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| Q |
458 |
cagtttcctttctcccatcaaaacccccaaac |
489 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
92642 |
cagtttcctttctcccatcaaaacccccaaac |
92673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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