View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4789_low_42 (Length: 210)
Name: NF4789_low_42
Description: NF4789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4789_low_42 |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 5e-98; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 16 - 196
Target Start/End: Original strand, 42788868 - 42789048
Alignment:
| Q |
16 |
caagaacaccccggagatatattcaatttcagttcattcaaaacaatattccaaagttccaattcaccttccttagttgactccttcaaaagtggactca |
115 |
Q |
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| T |
42788868 |
caagaacaccccggagatatattcaatttcagttcattcaaaacaatattccaaagttccaattcaccttccttagttgactccttcaaaagtggactca |
42788967 |
T |
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| Q |
116 |
aattcatccaacaaaacaaacctgcattccctttcaaacactcaattccaacacttttcaaaccttcaattatcatttcat |
196 |
Q |
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| T |
42788968 |
aattcatccaacaaaacaaacctgcattccctttcaaacactcaattccaacacttttcaaaccttcaattatcatttcat |
42789048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 16 - 196
Target Start/End: Original strand, 42798406 - 42798586
Alignment:
| Q |
16 |
caagaacaccccggagatatattcaatttcagttcattcaaaacaatattccaaagttccaattcaccttccttagttgactccttcaaaagtggactca |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42798406 |
caagaacaccccggagatatattcaatttcagttcattcaaaacaatattccaaagttccaattcaccttccttagttgactccttcaaaagtggactca |
42798505 |
T |
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| Q |
116 |
aattcatccaacaaaacaaacctgcattccctttcaaacactcaattccaacacttttcaaaccttcaattatcatttcat |
196 |
Q |
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| T |
42798506 |
aattcatccaacaaaacaaacctgcattccctttcaaacactcaattccaacacttttcaaaccttcaattatcatttcat |
42798586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 108 - 196
Target Start/End: Original strand, 34566633 - 34566721
Alignment:
| Q |
108 |
tggactcaaattcatccaacaaaacaaacctgcattccctttcaaacactcaattccaacacttttcaaaccttcaattatcatttcat |
196 |
Q |
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|||||||| |||||||||||||||||| |||||||| |||||||| || ||||||||| ||||||||||||||||||| |||||||||| |
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| T |
34566633 |
tggactcatattcatccaacaaaacaaccctgcattacctttcaagcattcaattccagcacttttcaaaccttcaatgatcatttcat |
34566721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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