View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4789_low_6 (Length: 430)
Name: NF4789_low_6
Description: NF4789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4789_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 31 - 398
Target Start/End: Complemental strand, 48896704 - 48896335
Alignment:
| Q |
31 |
cacataaactcatttcctttttattactattttcaaaagtgaaatcgaactggttttccctctggatcatgactcaaccacttggtctggtggggttggc |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
48896704 |
cacataaactcatttcctttttattactattttctaaagtgaaatcgaactggttttccctctggatcatgactcaaccacttcgtctggtggggttggc |
48896605 |
T |
|
| Q |
131 |
ttctcactcttggagtgtgctgctcttaaagtatcaggtttgattctactcgatgtcaatttcggtggacgaagttggcttcttnnnnnnnn--cactac |
228 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
48896604 |
ttctcactcttagagtgtgctgctctcaaagtatcaggtttgattctatttgatgtcaatttcggtggacgaagttggcttcttaaaaaaaaaacactac |
48896505 |
T |
|
| Q |
229 |
tttaaattgctacatagtaagtttagcgcagtgtctttgaatttgaagaatttttatgtttctttgtaattcttgctaccttcagcataaatctttctcg |
328 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
48896504 |
tttaaattgctacatagtaagtttagctcagtgtctttgaatttgaagaatttttatgtttctttgtaattcttgttaccttcagcataaatctttctcg |
48896405 |
T |
|
| Q |
329 |
aatttgtatgcatggatcaaatgcttcatgaatattctcaagttattcaatgatggaccaatctcacaaa |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48896404 |
aatttgtatgcatggatcaaatgcttcatgaatattctcaagttattcaatgatggaccaatctcacaaa |
48896335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University