View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4789_low_8 (Length: 419)
Name: NF4789_low_8
Description: NF4789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4789_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 22 - 400
Target Start/End: Original strand, 389014 - 389396
Alignment:
| Q |
22 |
gaacatgttgtggttagttct----ttctttctttggaggcacagagaaaagaaatagaaagtaagcttccatacaaagcaatatataaagggtcaactt |
117 |
Q |
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| T |
389014 |
gaacatgttgtggttagttctttctttctttctttggaggcacagagaaaagaaatagaaactaagcttccatacaaagcaatatataaagggtcaactt |
389113 |
T |
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| Q |
118 |
tattcaacaagatttaattaactaatgattataaccattttgaaacatttgcatatgattaataagactaagctccaagctaaacaaatattatttaata |
217 |
Q |
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| T |
389114 |
tattcaacaagatttaattaactaatgattataaccattttgaaacatttgcatatgattaataagactaagctccaagctaaacaaatattatttaata |
389213 |
T |
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| Q |
218 |
gtatggaagaaattgaaaagtggataagttaagaaatcccttgttgacaaattaatctgtgtcaccttccaatctagctttatatatgtttgaagtaact |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
389214 |
gtatggaagaaattgaaaagtggataagttaagaaatcccttgttgacaaattaatctgtgtcaccttccaatctagctttatatatgtttgaagtaact |
389313 |
T |
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| Q |
318 |
taaagaacaaagaaagatgaattcaagagagtgtgaagttgagcaatagaatcttgcaggtaactgttccatgataaagtggg |
400 |
Q |
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||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
389314 |
taaagaacaaagaaagatgaattgaagagagtgcgaagttgagcaatagaatcttgcaggtaactgttccatgataaagtggg |
389396 |
T |
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