View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4790-Insertion-1 (Length: 666)

Name: NF4790-Insertion-1
Description: NF4790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4790-Insertion-1
NF4790-Insertion-1
[»] chr8 (2 HSPs)
chr8 (5-666)||(9028514-9029176)
chr8 (431-555)||(22573135-22573259)
[»] chr7 (6 HSPs)
chr7 (428-630)||(23318854-23319056)
chr7 (438-544)||(41482422-41482528)
chr7 (438-539)||(2333993-2334094)
chr7 (427-543)||(39594631-39594747)
chr7 (448-544)||(24429707-24429803)
chr7 (436-534)||(39644909-39645007)
[»] chr4 (7 HSPs)
chr4 (431-544)||(45413772-45413885)
chr4 (436-544)||(2183300-2183408)
chr4 (436-555)||(33235785-33235904)
chr4 (436-544)||(36625538-36625646)
chr4 (427-549)||(33451319-33451441)
chr4 (437-492)||(19181467-19181522)
chr4 (431-544)||(26635263-26635376)
[»] chr1 (7 HSPs)
chr1 (431-544)||(26793757-26793870)
chr1 (440-534)||(45792690-45792784)
chr1 (438-534)||(50004908-50005004)
chr1 (437-544)||(49236173-49236280)
chr1 (459-549)||(19806753-19806843)
chr1 (431-544)||(6768262-6768375)
chr1 (428-544)||(9383229-9383345)
[»] chr3 (2 HSPs)
chr3 (424-544)||(40416941-40417061)
chr3 (431-492)||(48936355-48936414)
[»] chr5 (1 HSPs)
chr5 (428-549)||(34731266-34731387)
[»] chr2 (3 HSPs)
chr2 (439-534)||(7670385-7670480)
chr2 (431-489)||(16567767-16567825)
chr2 (428-549)||(40054460-40054581)
[»] chr6 (2 HSPs)
chr6 (462-543)||(129102-129183)
chr6 (459-544)||(8547437-8547522)


Alignment Details
Target: chr8 (Bit Score: 554; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 5 - 666
Target Start/End: Complemental strand, 9029176 - 9028514
Alignment:
Q  5 acactcattaccatttcccataataaatatgtacaaatgcatataagtacaaatgcataacccaatccatctgaaatcatttcagagctccctcccacaa 104  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  9029176 acactcattaccatttcccataataaatatgtacaaatacatataagtacagttgcataacccaatccatctgaaatcatttcagagctccctcccacaa 9029077  T
Q  105 atggcgatttttcgtttgataagaaactaagagtagtataaaagtattctcatactaatttaat-gtgtaatattaagctagatttattggtggatttgt 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||    
T  9029076 atggcgatttttcgtttgataagaaactaagagtagtataaaagtattctcatactaatttaattgtgtaatattaagctagatttattggtggatctgt 9028977  T
Q  204 acgaaatattagcaatgattcacacctagtggttagggttttcaatcaagatgttgaggttcctcggtgcttaagaattatttgaaaaaattgtaaagag 303  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  9028976 acgaaatattggcaatgattcacacctagtggttagggttttcaatcaagatgttgaggttcctcggtacttaagaattatttggaaaaattgtaaagag 9028877  T
Q  304 atagcaaggagctggaattactgctgttctcagatttttagagaagggagtggaattgcagctgcattgtctaaaaatggacaaagtttgccattttcgg 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9028876 atagcaaggagctggaattactgctgttctcagatttttagagaaggcagtggaattgcagctgcattgtctaaaaatggacaaagtttgccattttcgg 9028777  T
Q  404 cccgtttggtgggatatgatctgcttaaatcggttgtttggtgtaccaacagaataggataatttaaacctatttttaatcctatcctattgaacctttg 503  Q
    |  |||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  9028776 cttgtttggtgggatatgatctgcttaaatcggttgtttggtgcaccaacataaaaggataatttaaacctatttttaatcctatcctattgaacctttg 9028677  T
Q  504 taattcttaacattggtttttgatgggttagcaacctgataagatataactaagtgtgttttcattttcctccaaaaccattcttcaactctcaccatct 603  Q
    ||||||||| | ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  9028676 taattcttatccttggtttttgatgggttagcaacctgataggatataactaagcgtgttttcattttcctccaaaacccttcttcaactctcaccatct 9028577  T
Q  604 gcaacaaacgctatttttactcaattgnnnnnnncccatgtgtttcttctttcccaccctctg 666  Q
    ||||||||||||| |||||||||||||       |||||||||||||||||| ||||||||||    
T  9028576 gcaacaaacgctaattttactcaattgtttttttcccatgtgtttcttcttttccaccctctg 9028514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 431 - 555
Target Start/End: Original strand, 22573135 - 22573259
Alignment:
Q  431 aatcggttgtttggtgtaccaacagaataggataatttaaacctatttttaatcctatcctattgaacctttgtaattcttaacattggtttttgatggg 530  Q
    |||| ||||||||||| |||||||| | | ||||| || ||||| ||| ||||||||||||||||||||||||||||||||| | || ||||||| ||||    
T  22573135 aatccgttgtttggtgcaccaacaggaaatgataagtttaacctgtttctaatcctatcctattgaacctttgtaattcttatccttagtttttggtggg 22573234  T
Q  531 ttagcaacctgataagatataacta 555  Q
    ||| |||| ||||| |||| |||||    
T  22573235 ttaacaacatgataggataaaacta 22573259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 1e-39; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 428 - 630
Target Start/End: Complemental strand, 23319056 - 23318854
Alignment:
Q  428 ttaaatcggttgtttggtgtaccaacagaataggataatttaaacctatttttaatcctatcctattgaacctttgtaattcttaacattggtttttgat 527  Q
    ||||||| ||||||||||  |||||||  | |||||||||||||||||||||||||||||||||||||| ||||||||||| ||| | ||||||||||||    
T  23319056 ttaaatctgttgtttggtccaccaacatgaaaggataatttaaacctatttttaatcctatcctattgagcctttgtaatttttatccttggtttttgat 23318957  T
Q  528 gggttagcaacctgataagatataact-----aagtgtgttttcattttcctccaaaaccattcttcaactctcaccatctgcaacaaacgctattttta 622  Q
    |||||||     || ||  ||||||||     ||| ||||||||| |||||||||||||| |||||| |||||| || ||||||||||||||||  ||||    
T  23318956 gggttag-----tggtagcatataactatcagaagcgtgttttcagtttcctccaaaacccttcttcgactctcgccttctgcaacaaacgctaacttta 23318862  T
Q  623 ctcaattg 630  Q
    ||||||||    
T  23318861 ctcaattg 23318854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 438 - 544
Target Start/End: Complemental strand, 41482528 - 41482422
Alignment:
Q  438 tgtttggtgtaccaacagaataggataatttaaacctatttttaatcctatcctattgaacctttgtaattcttaacattggtttttgatgggttagcaa 537  Q
    ||||||||| |||||||| | ||||||| |||||||||||||||||| ||||||| | | ||||||| ||| ||| | || ||||||| |||||||||||    
T  41482528 tgtttggtgcaccaacaggaaaggataacttaaacctatttttaatcatatcctactcaccctttgttatttttatccttagtttttggtgggttagcaa 41482429  T
Q  538 cctgata 544  Q
    |||||||    
T  41482428 cctgata 41482422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 438 - 539
Target Start/End: Complemental strand, 2334094 - 2333993
Alignment:
Q  438 tgtttggtgtaccaacagaataggataatttaaacctatttttaatcctatcctattgaacctttgtaattcttaacattggtttttgatgggttagcaa 537  Q
    ||||||||| ||||| || || |||||| |||||||||||||||||||||||||||| | | ||||| ||| ||| |  ||||||||| | |||||||||    
T  2334094 tgtttggtgcaccaataggattggataacttaaacctatttttaatcctatcctattcaccttttgttatttttatctctggtttttggttggttagcaa 2333995  T
Q  538 cc 539  Q
    ||    
T  2333994 cc 2333993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 427 - 543
Target Start/End: Original strand, 39594631 - 39594747
Alignment:
Q  427 cttaaatcggttgtttggtgtaccaacagaataggataatttaaacctatttttaatcctatcctattgaacctttgtaattcttaacattggtttttga 526  Q
    |||||||| ||||||||||| ||||| |  ||| | ||| |||||||||||  ||||| |||| |||| | ||||||||||| ||| | || ||||||||    
T  39594631 cttaaatccgttgtttggtgcaccaataagatatgctaaattaaacctattactaatcttatcatattcatcctttgtaatttttatccttagtttttga 39594730  T
Q  527 tgggttagcaacctgat 543  Q
    |||||||||||| ||||    
T  39594731 tgggttagcaacatgat 39594747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 448 - 544
Target Start/End: Original strand, 24429707 - 24429803
Alignment:
Q  448 accaacagaataggataatttaaacctatttttaatcctatcctattgaacctttgtaattcttaacattggtttttgatgggttagcaacctgata 544  Q
    ||||| |||| | ||||||||||| |||||| |||||||||| || | | ||||||| ||| ||| | || ||||||| ||||||||||||||||||    
T  24429707 accaatagaaaatgataatttaaaactatttataatcctatcttactcaccctttgttatttttatccttagtttttggtgggttagcaacctgata 24429803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 436 - 534
Target Start/End: Original strand, 39644909 - 39645007
Alignment:
Q  436 gttgtttggtgtaccaacagaataggataatttaaacctatttttaatcctatcctattgaacctttgtaattcttaacattggtttttgatgggttag 534  Q
    |||||||||||  |||| |||| ||||||| ||||||| |||| ||||||||||||| | | ||||||| ||| ||| | || ||||||| ||||||||    
T  39644909 gttgtttggtgcgccaatagaaaaggataacttaaacccatttataatcctatcctactcatcctttgttatttttatccttagtttttggtgggttag 39645007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 431 - 544
Target Start/End: Complemental strand, 45413885 - 45413772
Alignment:
Q  431 aatcggttgtttggtgtaccaacagaataggataatttaaacctatttttaatcctatcctattgaacctttgtaattcttaacattggtttttgatggg 530  Q
    |||||||||||||||| ||||| || | ||||||| ||||||||||||   ||||||||||||  ||||||||| ||| ||| | || ||||||| ||||    
T  45413885 aatcggttgtttggtgcaccaataggaaaggataaattaaacctatttcctatcctatcctatctaacctttgttatttttatccttagtttttggtggg 45413786  T
Q  531 ttagcaacctgata 544  Q
    ||||||||||||||    
T  45413785 ttagcaacctgata 45413772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 436 - 544
Target Start/End: Original strand, 2183300 - 2183408
Alignment:
Q  436 gttgtttggtgtaccaacagaataggataatttaaacctatttttaatcctatcctattgaacctttgtaattcttaacattggtttttgatgggttagc 535  Q
    ||||||||||| ||||| |||| ||||||| ||||||  ||||  |||||||||||||  ||||||||| ||| ||| | ||  |||||| |||||||||    
T  2183300 gttgtttggtgcaccaatagaaaaggataaattaaactcatttccaatcctatcctatccaacctttgttatttttatccttaatttttggtgggttagc 2183399  T
Q  536 aacctgata 544  Q
    |||||||||    
T  2183400 aacctgata 2183408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 436 - 555
Target Start/End: Complemental strand, 33235904 - 33235785
Alignment:
Q  436 gttgtttggtgtaccaacagaataggataatttaaacctatttttaatcctatcctattgaacctttgtaattcttaacattggtttttgatgggttagc 535  Q
    |||| |||||| ||||| |||| |  |||| || ||||| || |||||||||||||||||||||||||||||| ||| | ||  ||||||||| ||||||    
T  33235904 gttgcttggtgcaccaatagaaaataataagtttaacctgttcttaatcctatcctattgaacctttgtaattattatccttaatttttgatgagttagc 33235805  T
Q  536 aacctgataagatataacta 555  Q
    ||  ||||| |||| |||||    
T  33235804 aatatgataggataaaacta 33235785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 436 - 544
Target Start/End: Complemental strand, 36625646 - 36625538
Alignment:
Q  436 gttgtttggtgtaccaacagaataggataatttaaacctatttttaatcctatcctattgaacctttgtaattcttaacattggtttttgatgggttagc 535  Q
    ||||||||||| || || || ||| ||||| |||||||||||   |||||||||||||| | ||||||||||||| | | ||  |||||| |||||||||    
T  36625646 gttgtttggtgcactaataggatatgataaattaaacctattacgaatcctatcctattcaccctttgtaattctaatccttactttttgttgggttagc 36625547  T
Q  536 aacctgata 544  Q
    ||| |||||    
T  36625546 aacatgata 36625538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 427 - 549
Target Start/End: Original strand, 33451319 - 33451441
Alignment:
Q  427 cttaaatcggttgtttggtgtaccaacagaataggataatttaaacctatttttaatcctatcctattgaacctttgtaattcttaacattggtttttga 526  Q
    |||||||  ||||||||||| ||||| |  ||| |||||  ||||||||||  || | |||||||||| | ||||||||||| | | | || ||||||||    
T  33451319 cttaaattcgttgtttggtgcaccaatatgatatgataaaataaacctattactacttctatcctattcatcctttgtaattataatccttagtttttga 33451418  T
Q  527 tgggttagcaacctgataagata 549  Q
    ||||||| |||| ||||||||||    
T  33451419 tgggttaacaacatgataagata 33451441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 437 - 492
Target Start/End: Complemental strand, 19181522 - 19181467
Alignment:
Q  437 ttgtttggtgtaccaacagaataggataatttaaacctatttttaatcctatccta 492  Q
    |||||||||| |||||||  ||| ||||| |||||||||||| |||||||||||||    
T  19181522 ttgtttggtgcaccaacatgatatgataaattaaacctatttctaatcctatccta 19181467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 544
Target Start/End: Complemental strand, 26635376 - 26635263
Alignment:
Q  431 aatcggttgtttggtgtaccaacagaataggataatttaaacctatttttaatcctatcctattgaacctttgtaattcttaacattggtttttgatggg 530  Q
    |||| ||| ||||||| |||||||  ||| ||||| || |||||||||  ||| |||||||| |   ||||| | ||||||| | || ||||||| ||||    
T  26635376 aatccgttttttggtgcaccaacatgatatgataaatttaacctatttccaattctatcctactcctcctttattattcttatccttagtttttggtggg 26635277  T
Q  531 ttagcaacctgata 544  Q
    ||||||||||||||    
T  26635276 ttagcaacctgata 26635263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 3e-19; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 431 - 544
Target Start/End: Original strand, 26793757 - 26793870
Alignment:
Q  431 aatcggttgtttggtgtaccaacagaataggataatttaaacctatttttaatcctatcctattgaacctttgtaattcttaacattggtttttgatggg 530  Q
    |||| ||||||||||| ||||| |||| ||||||| |||||| ||||| ||||||||||||| | ||||||||| ||| |||   || ||||||| ||||    
T  26793757 aatccgttgtttggtgcaccaatagaaaaggataacttaaacttatttctaatcctatcctaatcaacctttgttatttttattcttagtttttggtggg 26793856  T
Q  531 ttagcaacctgata 544  Q
    ||||||||||||||    
T  26793857 ttagcaacctgata 26793870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 440 - 534
Target Start/End: Complemental strand, 45792784 - 45792690
Alignment:
Q  440 tttggtgtaccaacagaataggataatttaaacctatttttaatcctatcctattgaacctttgtaattcttaacattggtttttgatgggttag 534  Q
    ||||||| |||||||||| | ||||| || ||| | ||| ||||||||||||||||| ||||||||||||||| | || ||||||| ||||||||    
T  45792784 tttggtgcaccaacagaaaatgataagtttaacatgtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggttag 45792690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 438 - 534
Target Start/End: Complemental strand, 50005004 - 50004908
Alignment:
Q  438 tgtttggtgtaccaacagaataggataatttaaacctatttttaatcctatcctattgaacctttgtaattcttaacattggtttttgatgggttag 534  Q
    ||||||||| ||||| | || |||||||||||||||||||| ||||||||||||| | | ||||||| ||| ||| | || ||||||| ||||||||    
T  50005004 tgtttggtgcaccaataaaaaaggataatttaaacctatttctaatcctatcctaatcaccctttgttatttttatccttagtttttggtgggttag 50004908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 437 - 544
Target Start/End: Original strand, 49236173 - 49236280
Alignment:
Q  437 ttgtttggtgtaccaacagaataggataatttaaacctatttttaatcctatcctattgaacctttgtaattcttaacattggtttttgatgggttagca 536  Q
    |||||||||| ||||| |||| ||||||| |||||| |||||    ||||||||||   ||||||| | |||| || | |||||||||| ||||||||||    
T  49236173 ttgtttggtgcaccaatagaaaaggataaattaaacatatttcatttcctatcctacccaacctttcttattcatatccttggtttttggtgggttagca 49236272  T
Q  537 acctgata 544  Q
    ||||||||    
T  49236273 acctgata 49236280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 459 - 549
Target Start/End: Complemental strand, 19806843 - 19806753
Alignment:
Q  459 aggataatttaaacctatttttaatcctatcctattgaacctttgtaattcttaacattggtttttgatgggttagcaacctgataagata 549  Q
    ||||||| |||||||||||| ||||||||||||||| |  ||||||  |||| | | || ||||||| ||||||| |||||||||| ||||    
T  19806843 aggataaattaaacctatttctaatcctatcctattcactctttgtttttctaatccttagtttttggtgggttaacaacctgatatgata 19806753  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 431 - 544
Target Start/End: Original strand, 6768262 - 6768375
Alignment:
Q  431 aatcggttgtttggtgtaccaacagaataggataatttaaacctatttttaatcctatcctattgaacctttgtaattcttaacattggtttttgatggg 530  Q
    |||| ||||||||||||||||| |||| | ||||| |||||| |||||   ||||||| ||||  ||||||||| ||| ||| | ||  |||||| ||||    
T  6768262 aatctgttgtttggtgtaccaatagaaaatgataaattaaacttatttcctatcctattctatccaacctttgttatttttatccttaatttttggtggg 6768361  T
Q  531 ttagcaacctgata 544  Q
    |||| |||||||||    
T  6768362 ttaggaacctgata 6768375  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 428 - 544
Target Start/End: Complemental strand, 9383345 - 9383229
Alignment:
Q  428 ttaaatcggttgtttggtgtaccaacagaataggataatttaaacctatttttaatcctatcctattgaacctttgtaattcttaacattggtttttgat 527  Q
    |||||||  |||||||||| ||||| || |  |||||| ||||||| |||| ||||| ||||||| | | ||||||| ||| | | | ||  ||||||||    
T  9383345 ttaaatccattgtttggtgcaccaataggaacggataaattaaaccaatttctaatcttatcctactcaccctttgttattttcatccttaatttttgat 9383246  T
Q  528 gggttagcaacctgata 544  Q
    |||||||||||||||||    
T  9383245 gggttagcaacctgata 9383229  T

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Target: chr3 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 424 - 544
Target Start/End: Original strand, 40416941 - 40417061
Alignment:
Q  424 ctgcttaaatcggttgtttggtgtaccaacagaataggataatttaaacctatttttaatcctatcctattgaacctttgtaattcttaacattggtttt 523  Q
    |||||| |||| ||||||||||| | |||||||| | ||||| |||||  |||||||||||||||||||   | ||||| | ||||||| | ||||||||    
T  40416941 ctgcttcaatccgttgtttggtgcatcaacagaaaatgataaattaaatatatttttaatcctatcctaccaaccctttattattcttatccttggtttt 40417040  T
Q  524 tgatgggttagcaacctgata 544  Q
    || | ||||||||||||||||    
T  40417041 tgtttggttagcaacctgata 40417061  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 431 - 492
Target Start/End: Complemental strand, 48936414 - 48936355
Alignment:
Q  431 aatcggttgtttggtgtaccaacagaataggataatttaaacctatttttaatcctatccta 492  Q
    |||| ||||||||||| |||||||| |   |||||||||||||| |||||||||||||||||    
T  48936414 aatccgttgtttggtgcaccaacaggaa--gataatttaaacctgtttttaatcctatccta 48936355  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 428 - 549
Target Start/End: Original strand, 34731266 - 34731387
Alignment:
Q  428 ttaaatcggttgtttggtgtaccaacagaataggataatttaaacctatttttaatcctatcctattgaacctttgtaattcttaacattggtttttgat 527  Q
    |||||||  |||||||||| ||||| || | |||||||  |||||||||| |||||||||||||||  | ||||||| ||| | | | || ||||| | |    
T  34731266 ttaaatcccttgtttggtgcaccaataggaaaggataaactaaacctattgttaatcctatcctatcaatcctttgttattttaatccttagttttagct 34731365  T
Q  528 gggttagcaacctgataagata 549  Q
    ||||||||||||||||| ||||    
T  34731366 gggttagcaacctgataggata 34731387  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 439 - 534
Target Start/End: Original strand, 7670385 - 7670480
Alignment:
Q  439 gtttggtgtaccaacagaataggataatttaaacctatttttaatcctatcctattgaacctttgtaattcttaacattggtttttgatgggttag 534  Q
    |||||||| ||||| |||| | ||||| || ||||| ||| ||||||||||||||||| | ||||||||||||| | ||  |||||| ||||||||    
T  7670385 gtttggtgcaccaatagaaaatgataagtttaacctgtttctaatcctatcctattgagcttttgtaattcttatccttaatttttggtgggttag 7670480  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 431 - 489
Target Start/End: Complemental strand, 16567825 - 16567767
Alignment:
Q  431 aatcggttgtttggtgtaccaacagaataggataatttaaacctatttttaatcctatc 489  Q
    |||| ||||||||||| |||||||||| ||||||| || ||||||||| ||||||||||    
T  16567825 aatccgttgtttggtgcaccaacagaaaaggataagtttaacctatttctaatcctatc 16567767  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 428 - 549
Target Start/End: Complemental strand, 40054581 - 40054460
Alignment:
Q  428 ttaaatcggttgtttggtgtaccaacagaataggataatttaaacctatttttaatcctatcctattgaacctttgtaattcttaacattggtttttgat 527  Q
    |||||||  |||||||||| ||||| |||| | |||||  |||||||||| |||||||||||||||  | ||||||| ||| | | | || ||||| | |    
T  40054581 ttaaatctcttgtttggtgcaccaatagaaaatgataaactaaacctattgttaatcctatcctatcaatcctttgttattttaatccttagttttagct 40054482  T
Q  528 gggttagcaacctgataagata 549  Q
    ||||||||||||| ||| ||||    
T  40054481 gggttagcaacctaataggata 40054460  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 462 - 543
Target Start/End: Complemental strand, 129183 - 129102
Alignment:
Q  462 ataatttaaacctatttttaatcctatcctattgaacctttgtaattcttaacattggtttttgatgggttagcaacctgat 543  Q
    |||| ||||||  ||||||||||||||| |||| | ||||||| ||| ||| | || |||||||||||| ||||||| ||||    
T  129183 ataacttaaactcatttttaatcctatcatattcaccctttgttatttttatctttagtttttgatgggctagcaacatgat 129102  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 459 - 544
Target Start/End: Complemental strand, 8547522 - 8547437
Alignment:
Q  459 aggataatttaaacctatttttaatcctatcctattgaacctttgtaattcttaacattggtttttgatgggttagcaacctgata 544  Q
    ||||||| |||||||||||| ||||| |||| |||| | ||||||| ||| |||   || ||||||| |||||||||||| |||||    
T  8547522 aggataacttaaacctatttctaatcttatcatattcaccctttgttatttttatacttagtttttggtgggttagcaacatgata 8547437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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