View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4790-Insertion-2 (Length: 951)
Name: NF4790-Insertion-2
Description: NF4790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4790-Insertion-2 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 824; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 824; E-Value: 0
Query Start/End: Original strand, 7 - 951
Target Start/End: Complemental strand, 44628700 - 44627763
Alignment:
| Q |
7 |
aaagtagtgctcttttctttgagttcctcttttcataccacttttcaaacgtatattaaatattcaaatgattgatctgctgctccaatcatcacatttt |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44628700 |
aaagtagtgctcttttctttgagttcctcttttcataccacttttcaaacgtatattaaatattcaaatgattgatctgctgctccaatcatcacatttt |
44628601 |
T |
|
| Q |
107 |
aatactttcacatgcctttaatagcagcttacttgcattcttaaccgttatcttccatccagagccaacaatgacacttgataaataaatgcatatgaag |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44628600 |
aatactttcacatgcctttaatagcagcttacttgcatt-ttaactgttatcttccatccagagccaacaatgacacttgataaataaatgcatatgaag |
44628502 |
T |
|
| Q |
207 |
aacagaaccaatgaattgaaatgatatcattgaacaggagcagaaaatcagaatgaaatttgaagacaaaaaaggtcaagttaaattctataggggatta |
306 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44628501 |
aacaaaaccaatgaattgaaatgatatcattgaacaggagcagaaaatcagaatgaaatttgaagacaaaaaaggtcaagttaaattctataggggatta |
44628402 |
T |
|
| Q |
307 |
tgtctccctagctttaactagaaagtgactatttatcagcattacgctttcagcatttagcaatttgacgataaacactaacaccatcaaagcatactga |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
44628401 |
tgtctccctagctttaactagaaagtgactatttatcagcattacgctttcagcatttagcaatttgacgataaacactaacaccattaaagcatactga |
44628302 |
T |
|
| Q |
407 |
ttcaatctaaatacatgtgtagtgatcaaacatttcttgttccactgcatttgattccataacatgtccaatctaaaagaata-aaaacaattaccaaag |
505 |
Q |
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| T |
44628301 |
ttcaatctaaatacatgtgtagtgatcaaaggtttcttgttccactgcatttgattccataacatgtccaatctaaaagaataaaaaacaattaccaaag |
44628202 |
T |
|
| Q |
506 |
tcttcaatatgatcttgtcaaggtcagatcagagcaccatcataactcgatcaattatttaattccaagaagagatcatcctacaagcaaaaatcatatc |
605 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44628201 |
tcttcaatatgatcttgtcaagg-----tcagagcaccatcataactcgatcaattatttaattccaagaagagatcatcctacaagcaaaaatcatatc |
44628107 |
T |
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| Q |
606 |
atatattatataaaccatagatgaaatagtaatttaaaatttaataggaaacagaacaatgtaaaattttttacaacttcaaagtaaacatattcaatag |
705 |
Q |
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| T |
44628106 |
atatattatataaaccatagatgaaatagtaatttaaaatttaataggaaacagaacaatgtacaaaattttacaacttcaaagtaaacatattcaatag |
44628007 |
T |
|
| Q |
706 |
ttagtaactcgatcatttacattttaaagtttgattaataaactaaatccaacatagctacttagtaaacaacaaatacaatgacatgatgaattttcat |
805 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44628006 |
ttagtaactcaatcatttacattttaaagtttgattaataaactcaatccaacatagctacttagtaaacaacaaatacaatgacatgatgaattttcat |
44627907 |
T |
|
| Q |
806 |
ttcctcttcaaactcatgtatgtgaagtttcaggtgtagaacaagttnnnnnnnggcacttacaaagagtagtttttgaatcagggcattgcacgtgtag |
905 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
44627906 |
ttcctcttcaaactcatgtatgtgaagtttcaggtgtagaacaagtt-aaaaaaggcacttacaaagagtagtttttgaatcagggcgttgcacgtgtag |
44627808 |
T |
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| Q |
906 |
aagaggatcctctcttctggcgttcccttctctccttgcttgaagg |
951 |
Q |
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| T |
44627807 |
aagaggatcctctcttccggcgct-ccttctctccttgcttgaagg |
44627763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 399 - 494
Target Start/End: Original strand, 42388496 - 42388592
Alignment:
| Q |
399 |
catactgattcaatctaaatacatgtgtagtgatcaaa--catttcttgttccactgcatttgattccataacatgtccaatctaaaagaataaaaac |
494 |
Q |
| |
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||||| ||||||||||||| ||| ||||||| |||| | ||| | | |||||||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
42388496 |
cataccgattcaatctaaa-acaagtgtagttatcacaagcatgtttcgttccactgcatttgattccttaacatgtccaatctaaaagaagaaaaac |
42388592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 399 - 494
Target Start/End: Original strand, 34597432 - 34597529
Alignment:
| Q |
399 |
catactgattcaatctaaatacatgtgtagtgatcaaa--catttcttgttccactgcatttgattccataacatgtccaatctaaaagaataaaaac |
494 |
Q |
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||||| ||||||||||||| ||| ||||||| |||| | ||| | |||||||||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
34597432 |
cataccgattcaatctaaaaacaagtgtagttatcacaagcatgttttgttccactgcatttgattccttaacatgtccaatctaaaagaagaaaaac |
34597529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 4e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 405 - 505
Target Start/End: Complemental strand, 26081640 - 26081537
Alignment:
| Q |
405 |
gattcaatctaaatacatgtgtagtgatcaaa--catttcttgttccactgcatttgattccataacatgtccaatctaaaagaataaaaa-caattacc |
501 |
Q |
| |
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||||||||||||| ||| || ||||||||| | ||||| |||||||| || |||||||||| ||||||||||||||||||||| ||||| |||||||| |
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| T |
26081640 |
gattcaatctaaaaacaagtttagtgatcacaagcattttttgttccaatggatttgattccttaacatgtccaatctaaaagacgaaaaaccaattacc |
26081541 |
T |
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| Q |
502 |
aaag |
505 |
Q |
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|||| |
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| T |
26081540 |
aaag |
26081537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 26081867 - 26081818
Alignment:
| Q |
91 |
ccaatcatcacattttaatactttcacatgcctttaatagcagcttactt |
140 |
Q |
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||||| |||||||||||||||||||||| | |||||| ||||||||||| |
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| T |
26081867 |
ccaattatcacattttaatactttcacaggtttttaattgcagcttactt |
26081818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 142
Target Start/End: Original strand, 42013185 - 42013262
Alignment:
| Q |
65 |
aatattcaaatgattgatctgctgctccaatcatcacattttaatactttcacatgcctttaatagcagcttacttgc |
142 |
Q |
| |
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|||||| |||| |||||| ||||||| ||| |||||||||| |||||||||| || |||||||||||||||||| |
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| T |
42013185 |
aatattaaaatcattgattggctgctctaatgatcacatttttgtactttcacagatctctaatagcagcttacttgc |
42013262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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