View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4790_high_1 (Length: 382)
Name: NF4790_high_1
Description: NF4790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4790_high_1 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 66 - 382
Target Start/End: Original strand, 1418253 - 1418568
Alignment:
| Q |
66 |
ataattccgttatttattagttctatactaattaattatttacatgttattatatgcagaagttattatcgttgcacacataacaattgtcgggtgnnnn |
165 |
Q |
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| T |
1418253 |
ataattccgttatttattagtactatactaattaattatttacatgttattatatgcagaagttattatcgttgcacacataacaattgtcgggtgaaaa |
1418352 |
T |
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| Q |
166 |
nnngagttgaacgactctcagaagattgtcgtatggtaataaccacttatgaaggcagacacaatcactctccttgtgacgactctaattcttctgaaca |
265 |
Q |
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| T |
1418353 |
aaagagttgaacgactctcagaagattgtcgtatggtaataaccacttatgaaggcagacacaatcactctccttgtgacgactctaattcttctgaaca |
1418452 |
T |
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| Q |
266 |
cgaatgttttacgtctttttgatccaacaatgtcgttccaataaaacaattatatatgttttgattaattattagttatgaannnnnnnnncatataata |
365 |
Q |
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| T |
1418453 |
cgaatgttttacgtctttttgatccaacaatgtcgttccaataaaacaattatatatgttttgattaattattagttgtg-atttttttttcatataata |
1418551 |
T |
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| Q |
366 |
catgattgagggatatt |
382 |
Q |
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| T |
1418552 |
catgattgagggatatt |
1418568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 1418170 - 1418239
Alignment:
| Q |
14 |
catcatgcatgtctttaaatatgctttatttcagctatttattttgttaggaataattccgttatttatt |
83 |
Q |
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| T |
1418170 |
catcatgcatgtctttaaatatgctttatttcagctatttattttgttaggaatatttccgttatttatt |
1418239 |
T |
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