View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4790_high_3 (Length: 319)
Name: NF4790_high_3
Description: NF4790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4790_high_3 |
 | |
|
| [»] chr3 (3 HSPs) |
| |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 12 - 319
Target Start/End: Complemental strand, 38407747 - 38407440
Alignment:
| Q |
12 |
tatactatggcagagatgtgggtgatttttggaatcaatgatttctattggagctgtacagctagttcttaatgaggttaaattgaactgtaggaatttg |
111 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38407747 |
tatattatggcagagatgtgggtgatttttggaatcaacgatttctattggagctgtacagctagttcttaatgaggttaaattgaactgtaggaatttg |
38407648 |
T |
|
| Q |
112 |
ataaacattctcgcggaagtctctcaaacaggaaagcagcggcacataccatacagagattccagattgacatttgagatgtagtatgtaatccaccggt |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
38407647 |
ataaacattctcgcggaagtctctcaaacaggaaagcagcggcacataccatacagagattccagattgacatttgaaatgtagcatgtaatccaccggt |
38407548 |
T |
|
| Q |
212 |
catttgaaatgttttccctggtaatccttttgtattataattttttacaagacttggtattccggttgtaggagtgaaactttctgtacattgagatttg |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
38407547 |
catttgaaatgttttccctggtaatccttttgtattataattttttacaagacttggtattccgattgtaggagtgaaactttctgtacattgagatttg |
38407448 |
T |
|
| Q |
312 |
cacaacgt |
319 |
Q |
| |
|
|||||||| |
|
|
| T |
38407447 |
cacaacgt |
38407440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 27 - 186
Target Start/End: Original strand, 38291752 - 38291903
Alignment:
| Q |
27 |
atgtgggtgatttttggaatcaatgatttctattggagctgtacagctagttcttaatgaggttaaattgaactgtaggaatttgataaacattctcgcg |
126 |
Q |
| |
|
|||||||||||||||| ||||| |||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
38291752 |
atgtgggtgatttttgtaatcattgatctctattggagctg--------gttcttaccgaggttaaattgaactgtaggaatttgataaatattcttgcg |
38291843 |
T |
|
| Q |
127 |
gaagtctctcaaacaggaaagcagcggcacataccatacagagattccagattgacattt |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
38291844 |
gaagtctctcaaacaggaaagcagcggcacataccatatagagattccagattgacattt |
38291903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 192 - 319
Target Start/End: Original strand, 38291972 - 38292099
Alignment:
| Q |
192 |
gtagtatgtaatccaccggtcatttgaaatgttttccctggtaatccttttgtattataattttttacaagacttggtattccggttgtaggagtgaaac |
291 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||| ||| ||||||||| |||||||||||||||| |
|
|
| T |
38291972 |
gtagtatgttatccaccagtcatttgaaatgttttcctcagtaatccttttgtattatgattttttacatgacctggtattccagttgtaggagtgaaac |
38292071 |
T |
|
| Q |
292 |
tttctgtacattgagatttgcacaacgt |
319 |
Q |
| |
|
|||| ||||||||||||||||||||||| |
|
|
| T |
38292072 |
tttcagtacattgagatttgcacaacgt |
38292099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 254 - 319
Target Start/End: Complemental strand, 34942961 - 34942896
Alignment:
| Q |
254 |
ttttacaagacttggtattccggttgtaggagtgaaactttctgtacattgagatttgcacaacgt |
319 |
Q |
| |
|
||||||| ||||| | ||| | |||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
34942961 |
ttttacacgacttagcattgcagttgtaggagtgaaacatttagtacattgagatttgcacaacgt |
34942896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 170
Target Start/End: Complemental strand, 34943182 - 34943110
Alignment:
| Q |
98 |
actgtaggaatttgataaacattctcgcggaagtctctcaaacaggaaagcagcggcacataccatacagaga |
170 |
Q |
| |
|
|||| |||||| |||| || ||||| || ||||| ||||| |||||||||||||| || |||||||||||||| |
|
|
| T |
34943182 |
actgcaggaatctgattaatattcttgctgaagtttctcagacaggaaagcagcgacatataccatacagaga |
34943110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University