View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4790_low_1 (Length: 478)

Name: NF4790_low_1
Description: NF4790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4790_low_1
NF4790_low_1
[»] chr2 (10 HSPs)
chr2 (113-363)||(28121818-28122068)
chr2 (6-112)||(1043561-1043666)
chr2 (376-466)||(28122050-28122140)
chr2 (333-411)||(19173191-19173269)
chr2 (333-410)||(19178227-19178304)
chr2 (357-400)||(21428925-21428968)
chr2 (376-415)||(28122100-28122139)
chr2 (346-399)||(14744375-14744428)
chr2 (356-400)||(3675278-3675322)
chr2 (359-395)||(38227278-38227314)
[»] chr7 (5 HSPs)
chr7 (6-112)||(31206447-31206554)
chr7 (6-112)||(31209885-31209990)
chr7 (177-303)||(2001617-2001742)
chr7 (9-86)||(2609481-2609557)
chr7 (347-395)||(47510371-47510419)
[»] chr4 (5 HSPs)
chr4 (6-112)||(6671201-6671306)
chr4 (6-112)||(6667529-6667634)
chr4 (9-112)||(895659-895762)
chr4 (374-410)||(1338304-1338340)
chr4 (345-385)||(42403359-42403399)
[»] scaffold0007 (1 HSPs)
scaffold0007 (11-112)||(26118-26216)
[»] chr8 (3 HSPs)
chr8 (6-78)||(1788743-1788814)
chr8 (357-410)||(33726458-33726511)
chr8 (338-400)||(18048052-18048114)
[»] chr5 (6 HSPs)
chr5 (356-415)||(421780-421839)
chr5 (11-98)||(31307220-31307306)
chr5 (168-324)||(19025110-19025271)
chr5 (334-411)||(24127322-24127397)
chr5 (356-410)||(37160716-37160770)
chr5 (356-418)||(38504112-38504174)
[»] scaffold0933 (1 HSPs)
scaffold0933 (9-92)||(965-1047)
[»] chr1 (7 HSPs)
chr1 (7-80)||(38828530-38828600)
chr1 (339-411)||(32478724-32478796)
chr1 (7-81)||(38825317-38825390)
chr1 (344-410)||(40663491-40663557)
chr1 (9-86)||(49873026-49873103)
chr1 (345-396)||(6366428-6366479)
chr1 (357-395)||(42803112-42803150)
[»] chr3 (4 HSPs)
chr3 (341-407)||(52017634-52017700)
chr3 (330-409)||(50497742-50497821)
chr3 (9-86)||(36666246-36666321)
chr3 (357-391)||(54254099-54254133)
[»] scaffold0320 (1 HSPs)
scaffold0320 (431-466)||(17276-17311)
[»] chr6 (2 HSPs)
chr6 (344-394)||(32576183-32576233)
chr6 (367-400)||(26485068-26485101)


Alignment Details
Target: chr2 (Bit Score: 179; Significance: 2e-96; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 113 - 363
Target Start/End: Original strand, 28121818 - 28122068
Alignment:
Q  113 gaattatgtgatgttctttgcctcttgaaggattaaggnnnnnnnnnnnnnnnnggtttggggttgttcatttgagagttcttaaatcttattgattggg 212  Q
    |||||||||| |||||||||||||||||||||||||||                ||||||||||||||||||||||||||||||||||||||||||||||    
T  28121818 gaattatgtggtgttctttgcctcttgaaggattaaggtttttctttttattttggtttggggttgttcatttgagagttcttaaatcttattgattggg 28121917  T
Q  213 gaaattgctcctacatgattgtattttggacaaagtttctaccctttggattttaagcgcatcatgattccttgctatcgggatagttacacggtaaaca 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||| |||    
T  28121918 gaaattgctcctacatgattgtattttggacaaagtttctaccctttggattttaagcgcttcatgattccttgctatcaggatagttacatggtacaca 28122017  T
Q  313 agaccttttactaattgaattgaacaaacattcaatttagttactaaacta 363  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28122018 agaccttttactaattgaattgaacaaacattcaatttagttcctaaacta 28122068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 6 - 112
Target Start/End: Original strand, 1043561 - 1043666
Alignment:
Q  6 cacagataagtttattgttctctctttttagatatattttattgatgcttctatttatataagatgattattatttgtagataattcttatgactaaatc 105  Q
    ||||||||||||||||||| |||||| | || ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |     
T  1043561 cacagataagtttattgttttctcttat-agctatattttattgatgcttctatttatatatgatgattattttttgtagataattcttatgactaattt 1043659  T
Q  106 tacaaca 112  Q
    |||||||    
T  1043660 tacaaca 1043666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 376 - 466
Target Start/End: Original strand, 28122050 - 28122140
Alignment:
Q  376 caatttagtccctaaactattaaaaccaactaaaagatccttactaaagggaatcttttagttgattttaatagtttagggacctaattga 466  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||    
T  28122050 caatttagttcctaaactaataaaaccaactaaaagatccttactgaaggggatcttttagttgattttaatagtttagggaccaaattga 28122140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 411
Target Start/End: Complemental strand, 19173269 - 19173191
Alignment:
Q  333 tgaacaaacattcaatttagttactaaactatcactctctcaccaatttagtccctaaactattaaaaccaactaaaag 411  Q
    |||| |||||||||||||| |  ||||| ||||||||| |||||||||| |||| | |||||||||||  |||||||||    
T  19173269 tgaataaacattcaatttaatctctaaattatcactctatcaccaattttgtccatgaactattaaaattaactaaaag 19173191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 333 - 410
Target Start/End: Complemental strand, 19178304 - 19178227
Alignment:
Q  333 tgaacaaacattcaatttagttactaaactatcactctctcaccaatttagtccctaaactattaaaaccaactaaaa 410  Q
    |||| |||||||||||||| |  ||||||||||||||| ||||| |||| |||| | || |||||||| |||||||||    
T  19178304 tgaataaacattcaatttaatcgctaaactatcactctatcacctatttcgtccatgaattattaaaatcaactaaaa 19178227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 400
Target Start/End: Complemental strand, 21428968 - 21428925
Alignment:
Q  357 taaactatcactctctcaccaatttagtccctaaactattaaaa 400  Q
    ||||||||||||||| | ||||||||||||||||||||| ||||    
T  21428968 taaactatcactctcacgccaatttagtccctaaactataaaaa 21428925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 415
Target Start/End: Complemental strand, 28122139 - 28122100
Alignment:
Q  376 caatttagtccctaaactattaaaaccaactaaaagatcc 415  Q
    |||||| |||||||||||||||||| ||||||||||||||    
T  28122139 caatttggtccctaaactattaaaatcaactaaaagatcc 28122100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 399
Target Start/End: Complemental strand, 14744428 - 14744375
Alignment:
Q  346 aatttagttactaaactatcactctctcaccaatttagtccctaaactattaaa 399  Q
    |||||||||  |||| ||||||||| ||||||||||||| | ||||||||||||    
T  14744428 aatttagtttttaaattatcactctatcaccaatttagttcataaactattaaa 14744375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 356 - 400
Target Start/End: Original strand, 3675278 - 3675322
Alignment:
Q  356 ctaaactatcactctctcaccaatttagtccctaaactattaaaa 400  Q
    |||||||||||| ||| |||||||||||||| |||||||| ||||    
T  3675278 ctaaactatcacactcccaccaatttagtccttaaactataaaaa 3675322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 359 - 395
Target Start/End: Original strand, 38227278 - 38227314
Alignment:
Q  359 aactatcactctctcaccaatttagtccctaaactat 395  Q
    ||||||||  |||||||||||||||||||||||||||    
T  38227278 aactatcaacctctcaccaatttagtccctaaactat 38227314  T

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Target: chr7 (Bit Score: 84; Significance: 1e-39; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 6 - 112
Target Start/End: Complemental strand, 31206554 - 31206447
Alignment:
Q  6 cacagataagtttattgttctctct-ttttagatatattttattgatgcttctatttatataagatgattattatttgtagataattcttatgactaaat 104  Q
    ||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |    
T  31206554 cacagataagtttattgttctctctcttttagctatattttatcgatgcttctatttatatatgatgattattatttgtagataattcttatgactaatt 31206455  T
Q  105 ctacaaca 112  Q
    ||||||||    
T  31206454 ctacaaca 31206447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 6 - 112
Target Start/End: Complemental strand, 31209990 - 31209885
Alignment:
Q  6 cacagataagtttattgttctctctttttagatatattttattgatgcttctatttatataagatgattattatttgtagataattcttatgactaaatc 105  Q
    |||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||    
T  31209990 cacagataagtttattgttctctctttt-atctatattttattgatgcttctatttatatatgatgattattatttgtagataactcttatgactaattc 31209892  T
Q  106 tacaaca 112  Q
    |||||||    
T  31209891 tacaaca 31209885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 177 - 303
Target Start/End: Complemental strand, 2001742 - 2001617
Alignment:
Q  177 tgttcatttgagagttcttaaatcttattgattggggaaattgctcctacatgattgtattttggacaaagtttctaccctttggattttaagcgcatca 276  Q
    ||||||||||||||| ||||| ||||||||||   |||||||| |   ||||||||||||||| |||||| || ||||||||| | ||||||| || | |    
T  2001742 tgttcatttgagagtgcttaattcttattgatacaggaaattgttggcacatgattgtattttagacaaa-ttactaccctttagtttttaagtgcttaa 2001644  T
Q  277 tgattccttgctatcgggatagttaca 303  Q
    |||||||||||||||| |||| |||||    
T  2001643 tgattccttgctatcgagataattaca 2001617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 2609557 - 2609481
Alignment:
Q  9 agataagtttattgttctctctttttagatatattttattgatgcttctatttatataagatgattattatttgtaga 86  Q
    ||||||||||||||||||||||||| |  ||||||||||||| |||| |||||||| | | |||||||||||| ||||    
T  2609557 agataagtttattgttctctctttt-acctatattttattgaggcttatatttataaatgttgattattatttataga 2609481  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 347 - 395
Target Start/End: Complemental strand, 47510419 - 47510371
Alignment:
Q  347 atttagttactaaactatcactctctcaccaatttagtccctaaactat 395  Q
    |||||||  ||||| |||||||||||||| ||||||||||| |||||||    
T  47510419 atttagtctctaaattatcactctctcactaatttagtccccaaactat 47510371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 6 - 112
Target Start/End: Complemental strand, 6671306 - 6671201
Alignment:
Q  6 cacagataagtttattgttctctctttttagatatattttattgatgcttctatttatataagatgattattatttgtagataattcttatgactaaatc 105  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||| |||| | ||||||||||| |||||| |     
T  6671306 cacagataagtttattgttctctctttt-agctatattttattgatgcttctatttatatatgatgattatgatttttggataattcttacgactaatta 6671208  T
Q  106 tacaaca 112  Q
    |||||||    
T  6671207 tacaaca 6671201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 6 - 112
Target Start/End: Complemental strand, 6667634 - 6667529
Alignment:
Q  6 cacagataagtttattgttctctctttttagatatattttattgatgcttctatttatataagatgattattatttgtagataattcttatgactaaatc 105  Q
    |||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||  ||||||||| |||| | |||||||||||||||||| |     
T  6667634 cacatataagtttattgttctctctttt-agctatattttattgatgcttctatttatatttgatgattatgatttttggataattcttatgactaatta 6667536  T
Q  106 tacaaca 112  Q
    |||||||    
T  6667535 tacaaca 6667529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 9 - 112
Target Start/End: Original strand, 895659 - 895762
Alignment:
Q  9 agataagtttattgttctctct-ttttagatatattttattgatgcttctatttatataagatgattattatttgtagataattcttatgactaaatcta 107  Q
    |||||||| || || ||||||| |||||| ||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||| | ||    
T  895659 agataagtctaatgatctctctcttttagctat-ttttattgatgcttctaattatatatgatgattattatttgtagataattctcatgactaattata 895757  T
Q  108 caaca 112  Q
    |||||    
T  895758 caaca 895762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 410
Target Start/End: Complemental strand, 1338340 - 1338304
Alignment:
Q  374 accaatttagtccctaaactattaaaaccaactaaaa 410  Q
    ||||||||| ||||||||||||||||| |||||||||    
T  1338340 accaatttaatccctaaactattaaaatcaactaaaa 1338304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 345 - 385
Target Start/End: Original strand, 42403359 - 42403399
Alignment:
Q  345 caatttagttactaaactatcactctctcaccaatttagtc 385  Q
    |||||||||  |||||||||||||||||| |||||||||||    
T  42403359 caatttagtccctaaactatcactctctctccaatttagtc 42403399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 112
Target Start/End: Complemental strand, 26216 - 26118
Alignment:
Q  11 ataagtttattgttctctctttttagatatattttattgatgcttctatttatataagatgattattatttgtagataattcttatgactaaatctacaa 110  Q
    ||||||| ||||||||||   ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||| | |||||    
T  26216 ataagttcattgttctct---tttagctatattttattgatgcttctatttatatatgatgattattatttgtagatgattcttatgattaattatacaa 26120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 6 - 78
Target Start/End: Complemental strand, 1788814 - 1788743
Alignment:
Q  6 cacagataagtttattgttctctctttttagatatattttattgatgcttctatttatataagatgattatta 78  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  1788814 cacagataagtttattgttctccctttt-agatatattttattgatgcttctatttatatatgatgattatta 1788743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 357 - 410
Target Start/End: Original strand, 33726458 - 33726511
Alignment:
Q  357 taaactatcactctctcaccaatttagtccctaaactattaaaaccaactaaaa 410  Q
    |||||||||||||||||||||||||||||  |||||||||||||  ||||||||    
T  33726458 taaactatcactctctcaccaatttagtcattaaactattaaaataaactaaaa 33726511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 400
Target Start/End: Original strand, 18048052 - 18048114
Alignment:
Q  338 aaacattcaatttagttactaaactatcactctctcaccaatttagtccctaaactattaaaa 400  Q
    ||||| ||||||||||  ||||||||||||||| |||||||||| | |||| |||||||||||    
T  18048052 aaacagtcaatttagtccctaaactatcactctatcaccaatttggcccctgaactattaaaa 18048114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 356 - 415
Target Start/End: Complemental strand, 421839 - 421780
Alignment:
Q  356 ctaaactatcactctctcaccaatttagtccctaaactattaaaaccaactaaaagatcc 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  421839 ctaaactatcactctctcaccaatttagtccctaaactattaaaatcaactaagagatcc 421780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 11 - 98
Target Start/End: Complemental strand, 31307306 - 31307220
Alignment:
Q  11 ataagtttattgttctctctttttagatatattttattgatgcttctatttatataagatgattattatttgtagataattcttatga 98  Q
    |||||||||||||||| |||||| |  ||||||||||| |||||| |||||||||| | ||||||||||||| |||||||||||||||    
T  31307306 ataagtttattgttctttctttt-acctatattttatttatgcttatatttatatatgttgattattatttggagataattcttatga 31307220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 168 - 324
Target Start/End: Complemental strand, 19025271 - 19025110
Alignment:
Q  168 gtttggggttgttcatttgagagttcttaaatcttattgattggggaaattgctcctacatgattgtattttggacaaagtttctaccc------tttgg 261  Q
    |||| ||| |||||| ||||||||  |||| ||||| |||   |||||||||||  ||||||||||||||||||||||| || ||||||      |||||    
T  19025271 gtttagggctgttcacttgagagtgtttaattcttagtgacacgggaaattgctggtacatgattgtattttggacaaa-ttactaccctttggttttgg 19025173  T
Q  262 attttaagcgcatcatgattccttgctatcgggatagttacacggtaaacaagaccttttact 324  Q
     ||||||| || | ||||||||||||||||| |||| ||||| | || ||| |||||||||||    
T  19025172 tttttaagtgcttaatgattccttgctatcgagataattacatgctacacatgaccttttact 19025110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 411
Target Start/End: Complemental strand, 24127397 - 24127322
Alignment:
Q  334 gaacaaacattcaatttagttactaaactatcactctctcaccaatttagtccctaaactattaaaaccaactaaaag 411  Q
    ||||||||| | ||||| ||  ||||||||||||||||  ||| |||||||| |||||||||||||| ||||||||||    
T  24127397 gaacaaacagttaatttggtccctaaactatcactctc--accgatttagtctctaaactattaaaatcaactaaaag 24127322  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 410
Target Start/End: Complemental strand, 37160770 - 37160716
Alignment:
Q  356 ctaaactatcactctctcaccaatttagtccctaaactattaaaaccaactaaaa 410  Q
    ||||||||||| ||||||   ||||||||| |||||||||||||| |||||||||    
T  37160770 ctaaactatcattctctcgttaatttagtctctaaactattaaaatcaactaaaa 37160716  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 418
Target Start/End: Complemental strand, 38504174 - 38504112
Alignment:
Q  356 ctaaactatcactctctcaccaatttagtccctaaactattaaaaccaactaaaagatcctta 418  Q
    ||||||||||| ||| | | ||| ||| ||||||||||||||||| ||||||||| |||||||    
T  38504174 ctaaactatcattcttttatcaagttaatccctaaactattaaaatcaactaaaatatcctta 38504112  T

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Target: scaffold0933 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0933
Description:

Target: scaffold0933; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 9 - 92
Target Start/End: Original strand, 965 - 1047
Alignment:
Q  9 agataagtttattgttctctctttttagatatattttattgatgcttctatttatataagatgattattatttgtagataattc 92  Q
    ||||||||||||||||||||||||| |  |||||||||||||||||| |||||||||| | ||||||||||||  |||||||||    
T  965 agataagtttattgttctctctttt-acctatattttattgatgcttatatttatatatgttgattattatttaaagataattc 1047  T

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Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 7 - 80
Target Start/End: Complemental strand, 38828600 - 38828530
Alignment:
Q  7 acagataagtttattgttctctctttttagatatattttattgatgcttctatttatataagatgattattatt 80  Q
    ||||||||||||||||||||||   ||||  |||||||||||||||||| |||||||||||| |||||||||||    
T  38828600 acagataagtttattgttctct---tttacctatattttattgatgcttatatttatataagttgattattatt 38828530  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 339 - 411
Target Start/End: Original strand, 32478724 - 32478796
Alignment:
Q  339 aacattcaatttagttactaaactatcactctctcaccaatttagtccctaaactattaaaaccaactaaaag 411  Q
    |||| ||||||| ||  ||||||||||| |||| |||||||||||||| ||||||||||||| ||||||||||    
T  32478724 aacactcaatttcgtccctaaactatcagtctcccaccaatttagtccataaactattaaaatcaactaaaag 32478796  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 7 - 81
Target Start/End: Complemental strand, 38825390 - 38825317
Alignment:
Q  7 acagataagtttattgttctctctttttagatatattttattgatgcttctatttatataagatgattattattt 81  Q
    |||||||| |||||||||||||||||| |  ||| |||||||||||||| |||||||||| | ||||||||||||    
T  38825390 acagataaatttattgttctctctttt-acctatgttttattgatgcttatatttatatatgttgattattattt 38825317  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 344 - 410
Target Start/End: Original strand, 40663491 - 40663557
Alignment:
Q  344 tcaatttagttactaaactatcactctctcaccaatttagtccctaaactattaaaaccaactaaaa 410  Q
    ||||||||||   ||||||||| ||||||||||||||| || ||||||||||||||| |||||||||    
T  40663491 tcaatttagtccataaactatcgctctctcaccaatttggttcctaaactattaaaatcaactaaaa 40663557  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 49873103 - 49873026
Alignment:
Q  9 agataagtttattgttctctctttttagatatattttattgatgcttctatttatataagatgattattatttgtaga 86  Q
    |||||||||||||| |||||||||| |  |||||||||||||| ||| ||||||||||   |||||||||||| ||||    
T  49873103 agataagtttattgatctctcttttcatttatattttattgattcttttatttatatattttgattattatttataga 49873026  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 396
Target Start/End: Complemental strand, 6366479 - 6366428
Alignment:
Q  345 caatttagttactaaactatcactctctcaccaatttagtccctaaactatt 396  Q
    |||||||||  ||| |||||||||  ||||||||||||||||||||||||||    
T  6366479 caatttagtccctatactatcacttcctcaccaatttagtccctaaactatt 6366428  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 395
Target Start/End: Original strand, 42803112 - 42803150
Alignment:
Q  357 taaactatcactctctcaccaatttagtccctaaactat 395  Q
    |||||||||| |||||||||||||||||| |||||||||    
T  42803112 taaactatcattctctcaccaatttagtctctaaactat 42803150  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 341 - 407
Target Start/End: Original strand, 52017634 - 52017700
Alignment:
Q  341 cattcaatttagttactaaactatcactctctcaccaatttagtccctaaactattaaaaccaacta 407  Q
    |||||||||||||  ||||||||||| ||||||| ||| ||||||||||||||||||||| ||||||    
T  52017634 cattcaatttagtccctaaactatcattctctcaacaaattagtccctaaactattaaaatcaacta 52017700  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 330 - 409
Target Start/End: Original strand, 50497742 - 50497821
Alignment:
Q  330 aattgaacaaacattcaatttagttactaaactatcactctctcaccaatttagtccctaaactattaaaaccaactaaa 409  Q
    ||||||||||||||| |||||| || ||||||||||||| ||||| ||||||  |||||||| | | ||| |||||||||    
T  50497742 aattgaacaaacatttaatttaattcctaaactatcactttctcatcaatttgatccctaaattttaaaacccaactaaa 50497821  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 36666246 - 36666321
Alignment:
Q  9 agataagtttattgttctctctttttagatatattttattgatgcttctatttatataagatgattattatttgtaga 86  Q
    |||||||||||||| |||||| ||||   |||||||||||||| ||| ||||||||||   |||||||||||| ||||    
T  36666246 agataagtttattgatctctccttttgtttatattttattgattcttttatttatata--ttgattattatttataga 36666321  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 391
Target Start/End: Complemental strand, 54254133 - 54254099
Alignment:
Q  357 taaactatcactctctcaccaatttagtccctaaa 391  Q
    ||||||||||||||||| |||||||||||||||||    
T  54254133 taaactatcactctctctccaatttagtccctaaa 54254099  T

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Target: scaffold0320 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 431 - 466
Target Start/End: Original strand, 17276 - 17311
Alignment:
Q  431 ttttagttgattttaatagtttagggacctaattga 466  Q
    ||||||||||||||||||||||||||||||||||||    
T  17276 ttttagttgattttaatagtttagggacctaattga 17311  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 394
Target Start/End: Complemental strand, 32576233 - 32576183
Alignment:
Q  344 tcaatttagttactaaactatcactctctcaccaatttagtccctaaacta 394  Q
    ||||||||||  ||||||||||| |||||| ||||||||||||||||||||    
T  32576233 tcaatttagtccctaaactatcagtctctctccaatttagtccctaaacta 32576183  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 400
Target Start/End: Original strand, 26485068 - 26485101
Alignment:
Q  367 ctctctcaccaatttagtccctaaactattaaaa 400  Q
    ||||||||||||||| ||||||||||||||||||    
T  26485068 ctctctcaccaatttggtccctaaactattaaaa 26485101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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