View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4790_low_5 (Length: 300)
Name: NF4790_low_5
Description: NF4790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4790_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 20 - 290
Target Start/End: Original strand, 38407004 - 38407274
Alignment:
| Q |
20 |
tcagtaagttgagccaaatcttgatcagcaatgttcattttgttgtgatctccagatacaaaatttacttgaacgtggtcttcaacatcttcctcgtcaa |
119 |
Q |
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| T |
38407004 |
tcagtaagttgagccaaatcttgatcagcaatgttcattttgttgtgatttcctgatacaaaatttacttgaacgtggtcttcaacatcttcctcgtcaa |
38407103 |
T |
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| Q |
120 |
tctccatctcctcatcaccatcttcatcaacacagcataatgatggcggtctattaaggctaaactgtaatatgttcaagctttttcggacccaagctgc |
219 |
Q |
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| T |
38407104 |
tctccatctcctcatcaccatcttcatcaacacagcataatgatgacggtctattaaggctaaactgtaatatgttcaagctttttcggacccaagctgc |
38407203 |
T |
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| Q |
220 |
tgaatgacctccacttggatccattggattgtcaccattttctttaatttgatgcagttcatcctgttcat |
290 |
Q |
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| T |
38407204 |
tgaatgacctccacttggatccattggattgtcaacattttctttaatttgatgcagttcatcctgttcat |
38407274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 43 - 286
Target Start/End: Complemental strand, 38292524 - 38292281
Alignment:
| Q |
43 |
atcagcaatgttcattttgttgtgatctccagatacaaaatttacttgaacgtggtcttcaacatcttcctcgtcaatctccatctcctcatcaccatct |
142 |
Q |
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| T |
38292524 |
atcatcaatgttcatcttgttgtcattttctgatacaaaatttacttgatcatggtcttcaacatcttcctctgcaatctccatctcctcatcaccatct |
38292425 |
T |
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| Q |
143 |
tcatcaacacagcataatgatggcggtctattaaggctaaactgtaatatgttcaagctttttcggacccaagctgctgaatgacctccacttggatcca |
242 |
Q |
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| T |
38292424 |
tcatcaacactgcataatggtggtggtctattaaggctagactgtaatatgttcaagctttttcggacccaagctgctgaatgacctccacttgggtcca |
38292325 |
T |
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| Q |
243 |
ttggattgtcaccattttctttaatttgatgcagttcatcctgt |
286 |
Q |
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| T |
38292324 |
atggattgtaaccattttctttaattcgatgcagttcatcctgt |
38292281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 151
Target Start/End: Original strand, 34942546 - 34942596
Alignment:
| Q |
101 |
tcaacatcttcctcgtcaatctccatctcctcatcaccatcttcatcaaca |
151 |
Q |
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| T |
34942546 |
tcaacaccatcctcgacaatctccatctcctcgtcaccatcttcatcaaca |
34942596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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