View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4790_low_6 (Length: 228)

Name: NF4790_low_6
Description: NF4790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4790_low_6
NF4790_low_6
[»] chr8 (3 HSPs)
chr8 (88-228)||(44687220-44687360)
chr8 (42-88)||(44687138-44687184)
chr8 (29-66)||(14939603-14939639)
[»] chr2 (6 HSPs)
chr2 (9-87)||(25302766-25302844)
chr2 (9-87)||(25306761-25306839)
chr2 (9-87)||(41602406-41602484)
chr2 (88-126)||(41602521-41602559)
chr2 (88-126)||(25306876-25306914)
chr2 (87-123)||(25302880-25302916)
[»] chr3 (5 HSPs)
chr3 (9-87)||(35244121-35244199)
chr3 (9-74)||(35243927-35243992)
chr3 (9-79)||(41874466-41874537)
chr3 (88-126)||(35244236-35244274)
chr3 (88-126)||(27972663-27972701)
[»] chr1 (4 HSPs)
chr1 (9-87)||(33773157-33773235)
chr1 (9-54)||(902144-902189)
chr1 (88-126)||(33773272-33773310)
chr1 (18-66)||(5924892-5924939)
[»] chr4 (6 HSPs)
chr4 (15-87)||(8005866-8005938)
chr4 (9-66)||(24807491-24807548)
chr4 (9-52)||(52545222-52545265)
chr4 (88-126)||(8005975-8006013)
chr4 (22-66)||(6732668-6732712)
chr4 (9-53)||(51295230-51295274)
[»] chr7 (3 HSPs)
chr7 (9-66)||(34844119-34844177)
chr7 (14-85)||(30511118-30511189)
chr7 (92-124)||(30511232-30511264)
[»] scaffold0006 (1 HSPs)
scaffold0006 (9-66)||(39212-39268)
[»] chr5 (1 HSPs)
chr5 (30-87)||(8081480-8081537)
[»] chr6 (4 HSPs)
chr6 (9-54)||(14618991-14619036)
chr6 (9-54)||(14611151-14611196)
chr6 (9-51)||(14620568-14620610)
chr6 (25-66)||(32080021-32080062)


Alignment Details
Target: chr8 (Bit Score: 141; Significance: 4e-74; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 88 - 228
Target Start/End: Original strand, 44687220 - 44687360
Alignment:
Q  88 tatgggaccttgatactcggcatcctctgattcataatagcattaatcattatcataaccaatgaaattaggtttgagcaagcaatcctaaactatgcga 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44687220 tatgggaccttgatactcggcatcctctgattcataatagcattaatcattatcataaccaatgaaattaggtttgagcaagcaatcctaaactatgcga 44687319  T
Q  188 gagcctaatattatacttttggagcggggaggagattgagt 228  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  44687320 gagcctaatattatacttttggagcggggaggagattgagt 44687360  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 42 - 88
Target Start/End: Original strand, 44687138 - 44687184
Alignment:
Q  42 atgtatcatttcaatcatcttttatacaattgtttcttagtgatgat 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  44687138 atgtatcatttcaatcatcttttatacaattgtttcttagtgatgat 44687184  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 66
Target Start/End: Original strand, 14939603 - 14939639
Alignment:
Q  29 tataggaacactcatgtatcatttcaatcatcttttat 66  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  14939603 tataggaacactcatgtatcatttc-atcatcttttat 14939639  T

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Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 25302766 - 25302844
Alignment:
Q  9 ttacacaactaaactctatatataggaacactcatgtatcatttcaatcatcttttatacaattgtttcttagtgatga 87  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25302766 ttacacaactaaactctatatataggatcactcatgtatcatttcaatcatcttttatacaattgtttcttagtgatga 25302844  T

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Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 25306761 - 25306839
Alignment:
Q  9 ttacacaactaaactctatatataggaacactcatgtatcatttcaatcatcttttatacaattgtttcttagtgatga 87  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  25306761 ttacacagctaaactctatatataggaacactcatgtaacatttcaatcatcttttatacaattgtttcttagtgatga 25306839  T

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Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 41602406 - 41602484
Alignment:
Q  9 ttacacaactaaactctatatataggaacactcatgtatcatttcaatcatcttttatacaattgtttcttagtgatga 87  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  41602406 ttacataactaaattctatatataggaacactcatgtatcatttcaaccaccttttatacaattgtttcttagtgatga 41602484  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 88 - 126
Target Start/End: Original strand, 41602521 - 41602559
Alignment:
Q  88 tatgggaccttgatactcggcatcctctgattcataata 126  Q
    |||||||||||||||||||||||||||||||||||||||    
T  41602521 tatgggaccttgatactcggcatcctctgattcataata 41602559  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 88 - 126
Target Start/End: Original strand, 25306876 - 25306914
Alignment:
Q  88 tatgggaccttgatactcggcatcctctgattcataata 126  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  25306876 tatgggaccttgatactcggcatcctctaattcataata 25306914  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Original strand, 25302880 - 25302916
Alignment:
Q  87 atatgggaccttgatactcggcatcctctgattcata 123  Q
    |||||||||||||||||||| |||||||| |||||||    
T  25302880 atatgggaccttgatactcgacatcctctaattcata 25302916  T

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Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 35244121 - 35244199
Alignment:
Q  9 ttacacaactaaactctatatataggaacactcatgtatcatttcaatcatcttttatacaattgtttcttagtgatga 87  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  35244121 ttacacaactaaactctatatataggaacactcatgtatcatttcaatcatcttttatataattttttcttagtgatga 35244199  T

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Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 35243992 - 35243927
Alignment:
Q  9 ttacacaactaaactctatatataggaacactcatgtatcatttcaatcatcttttatacaattgt 74  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35243992 ttacacaactaaactctatatataggaacactcatgtatcatttcaatcatcttttatacaattgt 35243927  T

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Target: chr3; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 41874466 - 41874537
Alignment:
Q  9 ttacacaactaaactctatatataggaacactcatgtatcatttcaatcatc-ttttatacaattgtttctt 79  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||    
T  41874466 ttacacaactaaactctatatataggaacactcatgtaccatttcaattatctttttatacaattgtttctt 41874537  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 88 - 126
Target Start/End: Original strand, 35244236 - 35244274
Alignment:
Q  88 tatgggaccttgatactcggcatcctctgattcataata 126  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  35244236 tatgggaccttgatactcgacatcctctgattcataata 35244274  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 126
Target Start/End: Original strand, 27972663 - 27972701
Alignment:
Q  88 tatgggaccttgatactcggcatcctctgattcataata 126  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  27972663 tatgggaccttgatattcggtatcctctgattcataata 27972701  T

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Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 33773157 - 33773235
Alignment:
Q  9 ttacacaactaaactctatatataggaacactcatgtatcatttcaatcatcttttatacaattgtttcttagtgatga 87  Q
    |||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  33773157 ttacacgactaaactctatatataagaacactcatgtatcatttccatcatcttttatacaattgttttttagtgatga 33773235  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 902144 - 902189
Alignment:
Q  9 ttacacaactaaactctatatataggaacactcatgtatcatttca 54  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||    
T  902144 ttacacaattaaactctctatataggaacactcatgtatcatttca 902189  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 126
Target Start/End: Original strand, 33773272 - 33773310
Alignment:
Q  88 tatgggaccttgatactcggcatcctctgattcataata 126  Q
    ||||||||||||||||||| |||||||| ||||||||||    
T  33773272 tatgggaccttgatactcgacatcctctaattcataata 33773310  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 5924939 - 5924892
Alignment:
Q  18 taaactctatatataggaacactcatgtatcatttcaatcatcttttat 66  Q
    ||||||||||||||| |||||||| ||||| ||||| ||||||||||||    
T  5924939 taaactctatatataagaacactcgtgtattatttc-atcatcttttat 5924892  T

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Target: chr4 (Bit Score: 61; Significance: 2e-26; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 8005866 - 8005938
Alignment:
Q  15 aactaaactctatatataggaacactcatgtatcatttcaatcatcttttatacaattgtttcttagtgatga 87  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  8005866 aactaatctctatatataggaacactcatgtatcatttcaatcatcttttattcaattgtttctttgtgatga 8005938  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 24807491 - 24807548
Alignment:
Q  9 ttacacaactaaactctatatataggaacactcatgtatcatttcaatcatcttttat 66  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  24807491 ttacacaactaaaatctatatataggaacactcatgtatcatttcaatcatcttttat 24807548  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 9 - 52
Target Start/End: Complemental strand, 52545265 - 52545222
Alignment:
Q  9 ttacacaactaaactctatatataggaacactcatgtatcattt 52  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  52545265 ttacacaactaaactctatatataggaacactcatgtatcattt 52545222  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 88 - 126
Target Start/End: Original strand, 8005975 - 8006013
Alignment:
Q  88 tatgggaccttgatactcggcatcctctgattcataata 126  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  8005975 tatgggaccttgacactcggcatcctctgattcataata 8006013  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 6732712 - 6732668
Alignment:
Q  22 ctctatatataggaacactcatgtatcatttcaatcatcttttat 66  Q
    ||||||||||||||||||||||||||| |||| |  |||||||||    
T  6732712 ctctatatataggaacactcatgtatcttttctactatcttttat 6732668  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 51295230 - 51295274
Alignment:
Q  9 ttacacaactaaactctatatataggaacactcatgtatcatttc 53  Q
    ||||||||||||||  |||||||||||||||| ||| ||||||||    
T  51295230 ttacacaactaaacattatatataggaacactaatgcatcatttc 51295274  T

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Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 34844119 - 34844177
Alignment:
Q  9 ttacacaactaaactctatatataggaacactcatgtatcatttcaat-catcttttat 66  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  34844119 ttacacaactaaactctatatataggaacactcatgtatcatttcaatccatcttttat 34844177  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 14 - 85
Target Start/End: Original strand, 30511118 - 30511189
Alignment:
Q  14 caactaaactctatatataggaacactcatgtatcatttcaatcatcttttatacaattgtttcttagtgat 85  Q
    ||||||||||||||||||||| |||| |||||| |||||   ||||||||||||||||||||||||| ||||    
T  30511118 caactaaactctatatatagggacacccatgtaccatttatctcatcttttatacaattgtttcttactgat 30511189  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 124
Target Start/End: Original strand, 30511232 - 30511264
Alignment:
Q  92 ggaccttgatactcggcatcctctgattcataa 124  Q
    |||||||||||||||||||||||||||||||||    
T  30511232 ggaccttgatactcggcatcctctgattcataa 30511264  T

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Target: scaffold0006 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 39212 - 39268
Alignment:
Q  9 ttacacaactaaactctatatataggaacactcatgtatcatttcaatcatcttttat 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  39212 ttacacaactaaactctatatataggaacactcatgtatcatttc-atcatcttttat 39268  T

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Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 8081480 - 8081537
Alignment:
Q  30 ataggaacactcatgtatcatttcaatcatcttttatacaattgtttcttagtgatga 87  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  8081480 ataggaacacccatgtatcatttcaatcatcttttatacaattgtttcttagtaatga 8081537  T

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Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 14618991 - 14619036
Alignment:
Q  9 ttacacaactaaactctatatataggaacactcatgtatcatttca 54  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  14618991 ttacacaactaaactctatatataggaacactcatgtatcatttca 14619036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 14611151 - 14611196
Alignment:
Q  9 ttacacaactaaactctatatataggaacactcatgtatcatttca 54  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||    
T  14611151 ttacacaactaaactctatatataggaacactcgtgtatcatttca 14611196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 14620568 - 14620610
Alignment:
Q  9 ttacacaactaaactctatatataggaacactcatgtatcatt 51  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  14620568 ttacacaactaaactctatatataggaaaactcatgtatcatt 14620610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 32080021 - 32080062
Alignment:
Q  25 tatatataggaacactcatgtatcatttcaatcatcttttat 66  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  32080021 tatatataggaacactcgtgtatcatttcaatcatcttttat 32080062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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