View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4791-Insertion-2 (Length: 934)

Name: NF4791-Insertion-2
Description: NF4791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4791-Insertion-2
NF4791-Insertion-2
[»] chr4 (1 HSPs)
chr4 (8-934)||(33762846-33763771)


Alignment Details
Target: chr4 (Bit Score: 915; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 915; E-Value: 0
Query Start/End: Original strand, 8 - 934
Target Start/End: Original strand, 33762846 - 33763771
Alignment:
Q  8 tctatatcaagctggttcagcttcgaagcatgtggcattccactattcataggactcatcaacatcatattagtctctgccctcatcaacaacgccttat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33762846 tctatatcaagctggttcagcttcgaagcatgtggcattccactattcataggactcatcaacatcatattagtctctgccctcatcaacaacgccttat 33762945  T
Q  108 taggcgtctcttgctggagattccctccatatttcacagcaacccccttccgaattccccggtcaaaattccggtacacttgaaaaccagcatcattgag 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33762946 taggcgtctcttgctggagattccctccatatttcacagcaacccccttccgaattccccggtcaaaattccggtacacttgaaaaccagcatcattgag 33763045  T
Q  208 taaaaaactgttatcaagagcccctagggttagggtttggataccaccatttgcagcctcttcaaactcctccatcaaatcacctctagatcgataaggc 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33763046 taaaaaactgttatcaagagcccctagggttagggtttggataccaccatttgcagcctcttcaaactcctccatcaaatcacctctagatcgataaggc 33763145  T
Q  308 tccggactcttcccggagccatcatcggaaactgcatcttcccaaacggaatcatctgcggcttccggcttcacccaaccgataaactccttcccgtaaa 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  33763146 tccggactcttcccggagccatcatcggaaactgcatcttcccaaacggaatcatccgcggcttccggcttcacccaaccgataaactccttcccgtaaa 33763245  T
Q  408 ccttaaccttattctcttccgtcggtgataaaccgtaaacattctcaaacgtgcagttttgaaactcagtgacgaatttccggtaggattcatcggtggg 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33763246 ccttaaccttattctcttccgtcggtgataaaccgtaaacattctcaaacgtgcagttttgaaactcagtgacgaatttccggtaggattcatcggtggg 33763345  T
Q  508 gaatttaagagcccagacaccgttggagacgaaatctacacggcgttgatcaccaaacatctttaattgaagttcggtggaaaccctagcgcggattttt 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33763346 gaatttaagagcccagacaccgttggagacgaaatctacacggcgttgatcaccaaacatctttaattgaagttcggtggaaaccctagcgcggattttt 33763445  T
Q  608 gaaccgactttgagaatccattgaccttgagcaacatcgttttgttcgtcttcttcctcgtcttcgtagtttttgacgaaggcgtaggaggttcgtttgt 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33763446 gaaccgactttgagaatccattgaccttgagcaacatcgttttgttcgtcttcttcctcgtcttcgtagtttttgacgaaggcgtaggaggttcgtttgt 33763545  T
Q  708 cggagagaatccatttagcgttgggagtgttgccgccgatgtgaaggtaaagcttgacagcgtttttgggaagtggtgtttttgtctctgattgcgattt 807  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33763546 cggagagaatccatttagcgttgggagtgttgccgccgatgtgaaggtaaagcttgacagcgtttttgggaagtggtgtttttgtctctgattgcgattt 33763645  T
Q  808 tgaaggtgaagagtatttgagttttaaggcactgagtttagcgtcgacatcgtcgaggtttgtgggaatgtgattgggatgaagattgagcgtcttggta 907  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  33763646 tgaaggtgaagagtatttgagttttaaggcactgagtttagcgtcgacatcgtcgaggtttgt-ggaatgtgattgggatgaagattgagcgtcttggta 33763744  T
Q  908 ttgatcttgatcttcttcttgttctgg 934  Q
    |||||||||||||||||||||||||||    
T  33763745 ttgatcttgatcttcttcttgttctgg 33763771  T

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