View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4791-Insertion-3 (Length: 700)
Name: NF4791-Insertion-3
Description: NF4791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4791-Insertion-3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 593; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 593; E-Value: 0
Query Start/End: Original strand, 8 - 677
Target Start/End: Complemental strand, 32561845 - 32561176
Alignment:
| Q |
8 |
atttcaagaatgagtgcaaatacaaaagtgttctaagaggttcaggtaaatcatatggtgaagctcaaatggttccaaatctgagcttatccttctcatg |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
32561845 |
atttcaagaatgagtgcaaatacaaaagtgttctaagaggttcaggtaaatcatatggtgaagctcaaatggttccaaacctgagcttatccttctcatg |
32561746 |
T |
|
| Q |
108 |
gcaacaaccaatgatgaattgggaagcattaatgctaggtatttggacactggttgttaaaaccatatgtcaagtcacnnnnnnntgtcttgtcagtttt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
32561745 |
gcaacaaccaatgatgaattgggaagcattaatgctaggtatttggacactggttgttaaaaccatatgtcaactcacaaaaaaatgtcttgtcagtttt |
32561646 |
T |
|
| Q |
208 |
gatgattctagagaaaccaagattaggtttttagacaacataactattccatgatagggagtatgaaatgtattgatcatatgcaagcatggacacaagg |
307 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
32561645 |
gatgattctagaaaaaccaagattaggtttttagacaacataactattccataatagggagtatgaaatgtattgatcatatgcaagcatggtcacaagg |
32561546 |
T |
|
| Q |
308 |
caatcatcacaagtgtgctatatgttcctagcatgaagaaatatatactcaatttcagtcaattactagaaaatggttttactatgcatcttgaacacaa |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32561545 |
caatcatcacaagtgtgctatatgttcctagcatgaagaaatatatactcaatttcagtcaattactagaaaatggttttactatgcatcttgaacacaa |
32561446 |
T |
|
| Q |
408 |
taaaattaaagtttttgatcctcaacacaaaagaattcgaagaactcccctatctaagaatagaacatttcaagtctaaatcattgcattggactttcac |
507 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
32561445 |
tcaaattaaagtttttgatcctcaacacaaaagaattcgaagaactcccctatctaagaatagagcatttcaggtctaaatcattgcattggactttcac |
32561346 |
T |
|
| Q |
508 |
tactttggaactaaggtgattgatgatgacgcatgattgtgactcaccttaagtcttagcacattgaagtagagggaaatggtacatgttttgccaatta |
607 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
32561345 |
tgctttggaactaaggtgattgatgatgacgcatgattgtgactcaccttaagtcttagcacattgaagtaaagggaaatggtacatgttttgccaatta |
32561246 |
T |
|
| Q |
608 |
ttaagtttcctatatgtttttaagaattgcttaatgagcaagcaaccgaggaaattaaatcatattatat |
677 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| | ||||||| |
|
|
| T |
32561245 |
ttaagtttcctatatgtttttaagaattgcttattaagcaagcaaccgaggaaattaaattaaattatat |
32561176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 659 - 700
Target Start/End: Complemental strand, 32561174 - 32561133
Alignment:
| Q |
659 |
aaattaaatcatattatatattatattgaaaggaataagcat |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32561174 |
aaattaaatcatattatatattatattgaaaggaataagcat |
32561133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University