View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4791-Insertion-4 (Length: 627)

Name: NF4791-Insertion-4
Description: NF4791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4791-Insertion-4
NF4791-Insertion-4
[»] chr6 (5 HSPs)
chr6 (267-574)||(5922332-5922627)
chr6 (7-223)||(5921900-5922116)
chr6 (402-573)||(5913377-5913544)
chr6 (572-617)||(5922658-5922702)
chr6 (572-617)||(5913576-5913621)
[»] chr5 (1 HSPs)
chr5 (19-239)||(20326168-20326387)
[»] chr8 (1 HSPs)
chr8 (183-244)||(36164903-36164964)


Alignment Details
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 267 - 574
Target Start/End: Original strand, 5922332 - 5922627
Alignment:
Q  267 gtttatttgaaatttgaatataattataaggtaatactttcatcaagtatcaacaaaagaagtttgtgctacaaccaagcctatcaaactctgaaaagat 366  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  5922332 gtttatttgaaatttgaatataattacaaggtaatactttcatcaaatatcaacaaaagaagtttgtgctacaaccaaggctatcaaactctgaaaagat 5922431  T
Q  367 tcaggtggaagatcatagcaacccattccatgattagcaagagatcaacagactagtacattttagaatatgcatatgataatgcatataaaacatgagt 466  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||            ||||||||||||| |||||    
T  5922432 tcaggtggaagatcatagcaacccattccatgattagcaagagatcaacagactagtacgttttagaat------------atgcatataaaacgtgagt 5922519  T
Q  467 caatatccaagttttgatacttggtgaatttaaagttcccatggacggtgcatgctattatgatcattagaagaaaactatgttactactaacaagttca 566  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5922520 caatatccaagttttgatacttggtgaatttaaagttcccatggacggtgcatgctattatgatcattagaagaaaactatgttactactaacaagttca 5922619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 7 - 223
Target Start/End: Original strand, 5921900 - 5922116
Alignment:
Q  7 aaagtgaaatgggaagcaacaaatacacagagaacgaagcttgaagacgaagcaatcaagcacaaaaatgaagaatcaagcacagaatcatgaagattca 106  Q
    |||||||||||  |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  5921900 aaagtgaaatgcaaagcaacaaatacatagagaacgaagcttgaagacgaagcaatcaggcacaaaaatgaagaatcaagcacataatcatgaagattca 5921999  T
Q  107 gtgaagaagatgaaggagagagggaaaattgcagcggaagttgttagaaaaaatggttatggatcgtaacaaactcccccattggaggagaagaaactga 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||    
T  5922000 gtgaagaagatgaaggagagagggaaaattgcagcggaagttgttagaaaaaacggttatggatcgtaacaaactccctcattgaaggagaagaaactga 5922099  T
Q  207 taccatattaagagaga 223  Q
    |||||||| ||||||||    
T  5922100 taccatatcaagagaga 5922116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 402 - 573
Target Start/End: Original strand, 5913377 - 5913544
Alignment:
Q  402 agcaagagatcaacagactagtacattttagaatatgcatatgataatgcatataaaacatgagtcaatatccaagttttgatacttggtgaatttaaag 501  Q
    ||||||||||| |||||||||||| ||||| |||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |    
T  5913377 agcaagagatctacagactagtacgttttacaatatgtatatgataatgcatataaaacgtgagtcaatgtccaagttttgatacttggtgaatttaatg 5913476  T
Q  502 ttcccatggacggtgcatgctattatgatcattagaagaaaactatgttactactaacaagttcaaattgct 573  Q
    ||||| |||||||    |||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  5913477 ttcccgtggacgg----tgctattatgatcattaggagaaaactatgttactcctaacaagttcaaattgct 5913544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 572 - 617
Target Start/End: Original strand, 5922658 - 5922702
Alignment:
Q  572 ctttaagattcaatggtaaaaagatagggcttgaacttttgaggtt 617  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||    
T  5922658 ctttaagatccaatggtaaaaagata-ggcttgaacttttgaggtt 5922702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 572 - 617
Target Start/End: Original strand, 5913576 - 5913621
Alignment:
Q  572 ctttaagattcaatggtaaaaagatagggcttgaacttttgaggtt 617  Q
    ||||||||| ||||||||||||||||||  || |||||||||||||    
T  5913576 ctttaagatccaatggtaaaaagataggctttaaacttttgaggtt 5913621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 123; Significance: 7e-63; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 20326168 - 20326387
Alignment:
Q  19 gaagcaacaaatacacagagaacgaagcttgaagacgaagcaatcaagcacaaaaatga-agaatcaagcacagaatcatgaagattcagtgaagaagat 117  Q
    |||||||||||| | |||| ||| ||||||||||||||||||||||||||||||||  | |||||||| |||||||||||||||||||| ||||||||||    
T  20326168 gaagcaacaaattctcagaaaacaaagcttgaagacgaagcaatcaagcacaaaaaaaagagaatcaatcacagaatcatgaagattcaatgaagaagat 20326267  T
Q  118 gaaggagagagggaaaattgcagcggaagttgttagaaaaaatggttatggatcgtaacaaactcccccattggaggagaagaaactgataccatattaa 217  Q
    || ||| | ||| ||||||||||||||||| |||||||||  | |||||||||| |||||||||| || |||| |||||||||||||||||||||||||     
T  20326268 gatggaaaaaggaaaaattgcagcggaagtagttagaaaaggttgttatggatcttaacaaactctccaattgaaggagaagaaactgataccatatta- 20326366  T
Q  218 gagagaaagaatatgaatgaaa 239  Q
     |||||||||||||||||||||    
T  20326367 -agagaaagaatatgaatgaaa 20326387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 183 - 244
Target Start/End: Original strand, 36164903 - 36164964
Alignment:
Q  183 ccccattggaggagaagaaactgataccatattaagagagaaagaatatgaatgaaaagtgt 244  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36164903 cccccttgaaggagaagaaactgataccatattaagagagaaagaatatgaatgaaaagtgt 36164964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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