View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4791-Insertion-5 (Length: 419)

Name: NF4791-Insertion-5
Description: NF4791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4791-Insertion-5
NF4791-Insertion-5
[»] chr7 (17 HSPs)
chr7 (93-419)||(19509197-19509521)
chr7 (155-293)||(40992738-40992877)
chr7 (165-293)||(2635604-2635733)
chr7 (203-289)||(2399711-2399798)
chr7 (156-295)||(12810304-12810443)
chr7 (7-81)||(19509082-19509153)
chr7 (156-295)||(3094336-3094480)
chr7 (202-272)||(21955376-21955445)
chr7 (205-289)||(13468877-13468962)
chr7 (232-293)||(29229743-29229804)
chr7 (197-289)||(34670364-34670457)
chr7 (202-270)||(15996147-15996215)
chr7 (203-255)||(36720211-36720263)
chr7 (202-272)||(23097542-23097612)
chr7 (96-153)||(30965783-30965840)
chr7 (232-295)||(35985265-35985329)
chr7 (232-295)||(36006673-36006737)
[»] chr1 (19 HSPs)
chr1 (156-286)||(34890200-34890331)
chr1 (156-289)||(24419528-24419662)
chr1 (154-299)||(20814744-20814894)
chr1 (156-295)||(5368780-5368919)
chr1 (203-289)||(8900805-8900892)
chr1 (202-299)||(49166649-49166747)
chr1 (202-293)||(5347003-5347094)
chr1 (203-289)||(5700076-5700163)
chr1 (202-266)||(11900863-11900927)
chr1 (202-306)||(35489191-35489296)
chr1 (205-289)||(41944781-41944866)
chr1 (232-295)||(1609969-1610033)
chr1 (242-296)||(11900909-11900964)
chr1 (156-260)||(15497477-15497578)
chr1 (156-270)||(31032437-31032551)
chr1 (172-293)||(51171263-51171385)
chr1 (240-293)||(28437227-28437280)
chr1 (207-289)||(32804291-32804375)
chr1 (208-272)||(882955-883019)
[»] chr4 (14 HSPs)
chr4 (156-289)||(38562137-38562271)
chr4 (204-289)||(8678986-8679073)
chr4 (202-293)||(6371956-6372048)
chr4 (206-289)||(23673401-23673485)
chr4 (189-289)||(52840279-52840379)
chr4 (208-301)||(17236164-17236255)
chr4 (202-289)||(10065077-10065165)
chr4 (162-289)||(20291793-20291921)
chr4 (246-289)||(33508543-33508587)
chr4 (239-289)||(6371926-6371977)
chr4 (202-295)||(20783730-20783824)
chr4 (157-289)||(30920705-30920838)
chr4 (246-289)||(10065151-10065195)
chr4 (246-293)||(32125423-32125471)
[»] chr5 (12 HSPs)
chr5 (172-289)||(7065596-7065714)
chr5 (155-272)||(5865870-5865987)
chr5 (165-306)||(8355553-8355694)
chr5 (202-289)||(14751166-14751254)
chr5 (156-295)||(28499777-28499916)
chr5 (246-293)||(28351029-28351077)
chr5 (214-307)||(18550970-18551064)
chr5 (159-256)||(25840570-25840668)
chr5 (200-293)||(11089296-11089394)
chr5 (242-289)||(5865922-5865970)
chr5 (202-294)||(20269449-20269541)
chr5 (200-299)||(35463992-35464091)
[»] chr3 (9 HSPs)
chr3 (203-289)||(29212885-29212972)
chr3 (246-299)||(16867619-16867673)
chr3 (197-289)||(18093814-18093907)
chr3 (223-289)||(8266442-8266510)
chr3 (207-289)||(55121185-55121268)
chr3 (242-295)||(27786537-27786591)
chr3 (156-272)||(1779523-1779638)
chr3 (156-295)||(16867613-16867753)
chr3 (154-270)||(19790754-19790870)
[»] chr8 (13 HSPs)
chr8 (202-293)||(40737864-40737955)
chr8 (202-270)||(24185563-24185631)
chr8 (202-262)||(429805-429865)
chr8 (155-302)||(14113211-14113359)
chr8 (197-293)||(44329193-44329291)
chr8 (202-299)||(1784130-1784228)
chr8 (202-289)||(6590794-6590882)
chr8 (200-272)||(18147850-18147922)
chr8 (246-304)||(6590868-6590927)
chr8 (246-292)||(6649158-6649205)
chr8 (202-289)||(42158394-42158480)
chr8 (225-295)||(8168911-8168983)
chr8 (203-298)||(30542503-30542599)
[»] chr6 (11 HSPs)
chr6 (203-279)||(6071902-6071978)
chr6 (200-270)||(31159116-31159186)
chr6 (216-289)||(862877-862950)
chr6 (203-299)||(24252928-24253020)
chr6 (205-302)||(1392485-1392582)
chr6 (200-294)||(29400673-29400766)
chr6 (246-299)||(5069941-5069995)
chr6 (249-293)||(862829-862874)
chr6 (242-289)||(674131-674179)
chr6 (232-295)||(2271196-2271260)
chr6 (156-224)||(5069935-5070003)
[»] chr2 (8 HSPs)
chr2 (202-286)||(43445045-43445129)
chr2 (156-289)||(41517375-41517509)
chr2 (214-289)||(11565012-11565088)
chr2 (202-293)||(14725218-14725310)
chr2 (202-270)||(33956327-33956395)
chr2 (207-272)||(25931618-25931683)
chr2 (232-272)||(644101-644141)
chr2 (226-270)||(43336540-43336584)
[»] scaffold0514 (1 HSPs)
scaffold0514 (246-295)||(5825-5875)
[»] scaffold0777 (1 HSPs)
scaffold0777 (206-260)||(4753-4807)


Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 93 - 419
Target Start/End: Original strand, 19509197 - 19509521
Alignment:
Q  93 tgatgtatttatgacttcgacatatgtttgatttatatttctaatataaattttctttttatgtactccctccgatcaaatttgtaagtaaaaatcaaca 192  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  19509197 tgatgtatatatgacttcgacgtatgtttgatttatatttctaatataaattttctttttatgtactccctccgatcaaatttgtaagtaaaaatcagca 19509296  T
Q  193 tttcaaattcattgaataatcaatgtatccggtcacatttatatgtcatatatattagttattcaatgtacctaaaaagtgttttttgcttataaatatg 292  Q
    ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |     
T  19509297 ttttaaattcattgaataatcaatgtatctggtcacatttatatgtcatatatattagttattcaatgtacctaaaaagttttttttgcttataaatgtt 19509396  T
Q  293 atcagagagaatattgtttaaacaaattatttatgactcttattagtatgatcgcgggttgaaaaccgcaagtgtttgatctcgggttctaattttgaat 392  Q
    | |||||||  |||| |||||||||| |||||||||| ||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  19509397 accagagag--tattctttaaacaaaatatttatgacacttgttagtatgatcccgggttgaaaaccgcaagtttttgatctcgggttctaattttgaat 19509494  T
Q  393 ttttcacttcttaatatttattgtgtg 419  Q
    ||| |||||||||||||||||||||||    
T  19509495 tttccacttcttaatatttattgtgtg 19509521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 155 - 293
Target Start/End: Complemental strand, 40992877 - 40992738
Alignment:
Q  155 gtactccctccgatcaaatttgtaagtaaaaatcaacatttcaaattcattgaataatcaatgtatccggtcacatttatatgtcatatatattagttat 254  Q
    |||||||||||||||| | ||  ||| ||||| |||| ||| |||| ||||||||||| |||| ||| ||||||||||||| ||||| || |||| ||||    
T  40992877 gtactccctccgatcacaattacaagcaaaaaacaactttttaaatacattgaataattaatgcatctggtcacatttataagtcatgtacattaattat 40992778  T
Q  255 tcaatgtacctaaaaagtg-ttttttgcttataaatatga 293  Q
    | |||||||||||||| || ||||||||||||||||||||    
T  40992777 ttaatgtacctaaaaattgcttttttgcttataaatatga 40992738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 165 - 293
Target Start/End: Complemental strand, 2635733 - 2635604
Alignment:
Q  165 cgatcaaatttgtaagtaaaaatcaacatttcaaattcattgaataatcaatgtatccggtcacatttatatgtcatatatattagttattcaatgtacc 264  Q
    |||||| |||| |||||||||| |||  ||| |||| ||||||||||  |||||||  ||||| |||||||||||  ||| |||||||||| ||||||||    
T  2635733 cgatcatatttataagtaaaaaacaattttttaaatacattgaataactaatgtatgtggtcatatttatatgtcgaatacattagttatttaatgtacc 2635634  T
Q  265 ta-aaaagtgttttttgcttataaatatga 293  Q
    || |||| ||| ||||| ||||||||||||    
T  2635633 taaaaaaatgtattttgtttataaatatga 2635604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 203 - 289
Target Start/End: Complemental strand, 2399798 - 2399711
Alignment:
Q  203 attgaataatcaatgtatccggtcacatttatatgtcatatatattagttattcaatgtacctaaaaag-tgttttttgcttataaat 289  Q
    |||||||||| |||||||||||||||||||||| || | ||| ||||  |||||||||||| || |||| ||||||||||||||||||    
T  2399798 attgaataattaatgtatccggtcacatttataagttagatacattaactattcaatgtacttagaaagttgttttttgcttataaat 2399711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 156 - 295
Target Start/End: Original strand, 12810304 - 12810443
Alignment:
Q  156 tactccctccgatcaaatttgtaagtaaaaatcaacatttcaaattcattgaataatcaatgtatccggtcacatttatatgtcatatatattagttatt 255  Q
    |||||||||| |||| |||| |||  ||||| |||| ||| | || ||||||||||| ||||||| |||||||||||| | | || ||| |||| |||||    
T  12810304 tactccctccaatcacatttataaccaaaaaccaacgttttagatacattgaataattaatgtattcggtcacattta-aggccagatacattaattatt 12810402  T
Q  256 caatgtacctaaaaag-tgttttttgcttataaatatgatc 295  Q
    |||| ||||||||||| ||| ||||||||| |||| |||||    
T  12810403 caatatacctaaaaagttgtgttttgcttacaaatgtgatc 12810443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 81
Target Start/End: Original strand, 19509082 - 19509153
Alignment:
Q  7 aatcccaatgttaatttacacactcgcaattatttttaaaaatatacatttttaatataagaaaggctaacaaat 81  Q
    ||||||||||||||||||||||||||||| |  ||||||||  ||||||||||||| | ||||||||||||||||    
T  19509082 aatcccaatgttaatttacacactcgcaaattattttaaaa--atacatttttaat-tgagaaaggctaacaaat 19509153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 156 - 295
Target Start/End: Complemental strand, 3094480 - 3094336
Alignment:
Q  156 tactccctccgatcaaatttgtaagtaaaaatcaacatttcaaattcattgaataatcaatgtatccggtc-acatttatatgtc--atatatattagtt 252  Q
    ||||||||||||||| |||| ||||||||||  ||| ||| |  ||||||||||||  |||||| | |||| | || |||| |||  ||| |||||||||    
T  3094480 tactccctccgatcacatttataagtaaaaaataacttttaaggttcattgaataactaatgtacctggtctatatatataagtcagatacatattagtt 3094381  T
Q  253 attcaatgtacctaaaaagt--gttttttgcttataaatatgatc 295  Q
    ||||| || |||||||||||   ||||||||||||||||||||||    
T  3094380 attcagtgaacctaaaaagttgtttttttgcttataaatatgatc 3094336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 202 - 272
Target Start/End: Original strand, 21955376 - 21955445
Alignment:
Q  202 cattgaataatcaatgtatccggtcacatttatatgtcatatatattagttattcaatgtacctaaaaagt 272  Q
    ||||||||||| ||||||||| ||||||||||||||||| ||| | || |||||||||||| |||||||||    
T  21955376 cattgaataattaatgtatccagtcacatttatatgtcagataca-taattattcaatgtatctaaaaagt 21955445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 289
Target Start/End: Original strand, 13468877 - 13468962
Alignment:
Q  205 tgaataatcaatgtatccggtcacatttatatgtcatatatattagttattcaatgtacct-aaaaagtgttttttgcttataaat 289  Q
    |||||||| |||||||||||||||||||||| || ||||| |||  ||||||||| ||| | ||||| |||||||| |||||||||    
T  13468877 tgaataataaatgtatccggtcacatttataggttatataaattgattattcaatctacataaaaaattgttttttccttataaat 13468962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 293
Target Start/End: Original strand, 29229743 - 29229804
Alignment:
Q  232 tatatgtcatatatattagttattcaatgtacctaaaaagtgttttttgcttataaatatga 293  Q
    |||| |||| ||| ||||||||||||||| |||||||||||  |||||||||||||||||||    
T  29229743 tataggtcagatacattagttattcaatgaacctaaaaagttgtttttgcttataaatatga 29229804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 289
Target Start/End: Complemental strand, 34670457 - 34670364
Alignment:
Q  197 aaattcattgaataatcaatgtatccggtcacatttatatgtcatatatattagttattcaatgtacctaaaaag-tgttttttgcttataaat 289  Q
    |||| ||||||||||| |||||||||| |||||||||| | | | ||| |||| | |||  |||||||||||||| ||||||||||||||||||    
T  34670457 aaatacattgaataattaatgtatccgatcacatttatgtattagatacattaatgattggatgtacctaaaaagttgttttttgcttataaat 34670364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 202 - 270
Target Start/End: Complemental strand, 15996215 - 15996147
Alignment:
Q  202 cattgaataatcaatgtatccggtcacatttatatgtcatatatattagttattcaatgtacctaaaaa 270  Q
    ||||||||||| |||||||||  |||| |||||| |||| ||| |||| ||||||||||||||||||||    
T  15996215 cattgaataattaatgtatccaatcacgtttataggtcagatacattaattattcaatgtacctaaaaa 15996147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 36720263 - 36720211
Alignment:
Q  203 attgaataatcaatgtatccggtcacatttatatgtcatatatattagttatt 255  Q
    |||||||||| |||||||| | |||||||||||||| ||||| ||||||||||    
T  36720263 attgaataattaatgtatctgatcacatttatatgttatatacattagttatt 36720211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 272
Target Start/End: Original strand, 23097542 - 23097612
Alignment:
Q  202 cattgaataatcaatgtatccggtcacatttatatgtcatatatattagttattcaatgtacctaaaaagt 272  Q
    ||||||| ||| |||||||||  ||||||||||| || | ||| |||| ||||||||| ||||||||||||    
T  23097542 cattgaacaattaatgtatcccatcacatttataagttaaatacattaattattcaatctacctaaaaagt 23097612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 153
Target Start/End: Original strand, 30965783 - 30965840
Alignment:
Q  96 tgtatttatgacttcgacatatgtttgatttatatttctaatataaattttcttttta 153  Q
    ||||||||||||||| || | ||||||||||||||||  || ||||| ||||||||||    
T  30965783 tgtatttatgacttcaacgtgtgtttgatttatattttcaagataaaatttcttttta 30965840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 295
Target Start/End: Complemental strand, 35985329 - 35985265
Alignment:
Q  232 tatatgtcatatatattagttattcaatgtacctaaaaag-tgttttttgcttataaatatgatc 295  Q
    |||| |||||||| ||||||||||||||  | |||||||| ||| |||||||||||||| |||||    
T  35985329 tataggtcatatacattagttattcaattaatctaaaaagttgtattttgcttataaatgtgatc 35985265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 295
Target Start/End: Complemental strand, 36006737 - 36006673
Alignment:
Q  232 tatatgtcatatatattagttattcaatgtacctaaaaag-tgttttttgcttataaatatgatc 295  Q
    |||| |||||||| ||||||||||||||  | |||||||| ||| |||||||||||||| |||||    
T  36006737 tataggtcatatacattagttattcaattaatctaaaaagttgtattttgcttataaatgtgatc 36006673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 8e-28; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 156 - 286
Target Start/End: Complemental strand, 34890331 - 34890200
Alignment:
Q  156 tactccctccgatcaaatttgtaagtaaaaatcaacatttcaaattcattgaataatcaatgtatccggtcacatttatatgtcatatatattagttatt 255  Q
    ||||||||||||| | |||| |||| |||||  |  |||| | |||||||||||||| |||||||||||| |||||||||||| | ||||||||||||||    
T  34890331 tactccctccgattacatttataagaaaaaaatactattttagattcattgaataattaatgtatccggttacatttatatgttagatatattagttatt 34890232  T
Q  256 caatgtacctaaaaag-tgttttttgcttata 286  Q
    ||||||| |||||||| |||||||||||||||    
T  34890231 caatgtatctaaaaagttgttttttgcttata 34890200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 156 - 289
Target Start/End: Original strand, 24419528 - 24419662
Alignment:
Q  156 tactccctccgatcaaatttgtaagtaaaaatcaacatttcaaattcattgaataatcaatgtatccggtcacatttatatgtcatatatattagttatt 255  Q
    ||||||||||| ||| |||| |||| |||||  ||| ||| | |||||||||| ||  ||||||||| |||| | ||||| |||| ||| |||| |||||    
T  24419528 tactccctccggtcacatttataagcaaaaaagaactttttagattcattgaagaactaatgtatccagtcataattataagtcagatacattaattatt 24419627  T
Q  256 caatgtacctaaaaag-tgttttttgcttataaat 289  Q
    |||||||||||||||| ||||||||||||||||||    
T  24419628 caatgtacctaaaaagttgttttttgcttataaat 24419662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 154 - 299
Target Start/End: Complemental strand, 20814894 - 20814744
Alignment:
Q  154 tgtactccctccgatcaaatttgtaagtaaaaatcaacatttcaaa---ttcattgaataatcaatgtatccggtcacatttatatgtcatatatattag 250  Q
    |||||||| |||||||| |||| |||| ||||| |||  ||| |||   |||||| |||||| ||||||||  ||||||||||||||||| ||| ||| |    
T  20814894 tgtactccttccgatcatatttataagcaaaaaacaaatttttaaaatattcattaaataattaatgtatcttgtcacatttatatgtcagatacattgg 20814795  T
Q  251 ttattcaatgtacctaaaaagt--gttttttgcttataaatatgatcagag 299  Q
    ||||||||||||||  ||||||   |||||| |||||||||||||||||||    
T  20814794 ttattcaatgtaccacaaaagttgttttttttcttataaatatgatcagag 20814744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 156 - 295
Target Start/End: Complemental strand, 5368919 - 5368780
Alignment:
Q  156 tactccctccgatcaaatttgtaagtaaaaatcaacatttcaaattcattgaataatcaatgtatccggtcacatttatatgtcatatatattagttatt 255  Q
    ||||||||||| ||| |||| |||| |||||| ||| ||| | || ||||||||||| |||||||||||||||||||||  || | ||| |||| |||||    
T  5368919 tactccctccggtcatatttataagcaaaaattaactttttagatgcattgaataattaatgtatccggtcacatttatgggttagatacattaattatt 5368820  T
Q  256 caatgtacctaaaaagtgttttttgcttataaatatgatc 295  Q
      |||||| |||||  | |||||||||||||||| |||||    
T  5368819 ggatgtacataaaagttattttttgcttataaatgtgatc 5368780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 203 - 289
Target Start/End: Complemental strand, 8900892 - 8900805
Alignment:
Q  203 attgaataatcaatgtatccggtcacatttatatgtcatatatattagttattcaatgtacctaaaaag-tgttttttgcttataaat 289  Q
    |||||||||| |||||||||||||||||||||| || | ||| |||| ||||||||||||||||||||| ||||| || |||||||||    
T  8900892 attgaataattaatgtatccggtcacatttataggttagatacattaattattcaatgtacctaaaaagttgtttattacttataaat 8900805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 202 - 299
Target Start/End: Original strand, 49166649 - 49166747
Alignment:
Q  202 cattgaataatcaatgtatccggtcacatttatatgtcatatatattagttattcaatgtacctaaaaag-tgttttttgcttataaatatgatcagag 299  Q
    |||| |||||| ||||||||| |||||||||||| || | ||| |||| |||||||||||| |||||||| |||||||||||||||||| ||| |||||    
T  49166649 cattaaataattaatgtatccagtcacatttataggttagatacattaattattcaatgtaactaaaaagttgttttttgcttataaatgtgaccagag 49166747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 202 - 293
Target Start/End: Original strand, 5347003 - 5347094
Alignment:
Q  202 cattgaataatcaatgtatccggtcacatttatatgtcatatatattagttattcaatgtacctaaaaagtgttttttgcttataaatatga 293  Q
    ||||||||||| |||||||||  |||||||||||| | | |||||||| ||||||||||| ||||||||||  |||||  | ||||||||||    
T  5347003 cattgaataattaatgtatccattcacatttatatattagatatattaattattcaatgttcctaaaaagtcattttttttaataaatatga 5347094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 203 - 289
Target Start/End: Original strand, 5700076 - 5700163
Alignment:
Q  203 attgaataatcaatgtatccggtcacatttatatgtcatatatattagttattcaatgtacctaaaaag-tgttttttgcttataaat 289  Q
    |||||||||| |||||||||| ||| |||||||  ||| ||  |||| ||||||||||||| ||||||| ||||||||||||||||||    
T  5700076 attgaataattaatgtatccgatcatatttatagatcaaatgcattaattattcaatgtacttaaaaagttgttttttgcttataaat 5700163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 202 - 266
Target Start/End: Complemental strand, 11900927 - 11900863
Alignment:
Q  202 cattgaataatcaatgtatccggtcacatttatatgtcatatatattagttattcaatgtaccta 266  Q
    ||||||||||| ||| |||| ||||||||||||| |||| ||| |||| ||||||||||||||||    
T  11900927 cattgaataattaatatatctggtcacatttataggtcaaatacattaattattcaatgtaccta 11900863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 202 - 306
Target Start/End: Complemental strand, 35489296 - 35489191
Alignment:
Q  202 cattgaataatcaatgtatccggtcacatttatatgtcatatatattagttattcaatgtacctaaaaag-tgttttttgcttataaatatgatcagaga 300  Q
    ||||||||||| |||| ||| ||| | ||||||| || | ||| |||| |||||||||||| |||||||| ||||||||| |||||||| ||| | |||     
T  35489296 cattgaataattaatgaatctggtgatatttataggttagatacattaattattcaatgtatctaaaaagttgttttttgattataaatgtgaccggagg 35489197  T
Q  301 gaatat 306  Q
    ||||||    
T  35489196 gaatat 35489191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 205 - 289
Target Start/End: Complemental strand, 41944866 - 41944781
Alignment:
Q  205 tgaataatcaatgtatccggtcacatttatatgtcatatatattagttattcaatgtacctaaaaag-tgttttttgcttataaat 289  Q
    |||||||| |||||| ||||||||||||||  || | ||| |||| |||||  || ||||||||||| ||||||||||||||||||    
T  41944866 tgaataattaatgtacccggtcacatttatgggttagatacattaattattggatatacctaaaaagttgttttttgcttataaat 41944781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 295
Target Start/End: Complemental strand, 1610033 - 1609969
Alignment:
Q  232 tatatgtcatatatattagttattcaatgtacctaaaaag-tgttttttgcttataaatatgatc 295  Q
    |||| |||| ||| |||| |||||||||||| |||||||| |||||||||||||||||| |||||    
T  1610033 tataggtcagatacattaattattcaatgtatctaaaaagttgttttttgcttataaatgtgatc 1609969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 242 - 296
Target Start/End: Original strand, 11900909 - 11900964
Alignment:
Q  242 atatattagttattcaatgtacctaaaaag-tgttttttgcttataaatatgatca 296  Q
    |||||||| |||||||||||| |||||||| || |||||| |||||||||||||||    
T  11900909 atatattaattattcaatgtatctaaaaagttggtttttgtttataaatatgatca 11900964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 260
Target Start/End: Original strand, 15497477 - 15497578
Alignment:
Q  156 tactccctccgatcaaatttgtaagtaaaaatcaacatttcaaattcattgaataatcaatgtatccggtcacatttatatgtcatatatattagttatt 255  Q
    ||||| ||||||||| |||| |||  |||||||||| ||| | ||| ||| | |||  |||||||||||||   | ||||||||||||| ||||||||||    
T  15497477 tactctctccgatcacatttataaacaaaaatcaactttttagatttattaactaagtaatgtatccggtc---tatatatgtcatatacattagttatt 15497573  T
Q  256 caatg 260  Q
    |||||    
T  15497574 caatg 15497578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 270
Target Start/End: Original strand, 31032437 - 31032551
Alignment:
Q  156 tactccctccgatcaaatttgtaagtaaaaatcaacatttcaaattcattgaataatcaatgtatccggtcacatttatatgtcatatatattagttatt 255  Q
    ||||||||||| ||| |||  |||| ||||| |||| ||| | ||||||  |||||| ||||||||  ||||||||||||   || ||| ||||||||||    
T  31032437 tactccctccggtcacattaataagcaaaaaacaactttttagattcatgaaataattaatgtatctagtcacatttatagaccaaatacattagttatt 31032536  T
Q  256 caatgtacctaaaaa 270  Q
     |||| |||||||||    
T  31032537 taatgaacctaaaaa 31032551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 293
Target Start/End: Complemental strand, 51171385 - 51171263
Alignment:
Q  172 atttgtaagtaaaaatcaacatttcaaattcattgaataatcaatgtatccggtcacatttatatgtcatatatattagttattcaatgtacctaaaaag 271  Q
    |||| ||||||||||  ||| ||| || |||||| |||||  |||||| |  |||| | ||||| |||| ||  |||| |||| |||| |||||||||||    
T  51171385 atttataagtaaaaaataactttttaagttcattaaataactaatgtaccgtgtcataattataggtcagattaattaattatacaatatacctaaaaag 51171286  T
Q  272 t-gttttttgcttataaatatga 293  Q
    | |||||||||||||||||||||    
T  51171285 ttgttttttgcttataaatatga 51171263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 293
Target Start/End: Complemental strand, 28437280 - 28437227
Alignment:
Q  240 atatatattagttattcaatgtacctaaaaagtgttttttgcttataaatatga 293  Q
    ||||||||||||||||||||   |||| |||||  |||||||||||||||||||    
T  28437280 atatatattagttattcaataagcctataaagttatttttgcttataaatatga 28437227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 289
Target Start/End: Original strand, 32804291 - 32804375
Alignment:
Q  207 aataatcaatgtatccggtcacatttatatgtcatatatattagttattcaatgtacct--aaaaagtgttttttgcttataaat 289  Q
    |||||| ||||||| | ||||||||||||||  | ||| |||| | |||||||||||||  ||||| |||||||| |||||||||    
T  32804291 aataattaatgtattcagtcacatttatatgatagatacattaatgattcaatgtacctaaaaaaactgttttttacttataaat 32804375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 272
Target Start/End: Complemental strand, 883019 - 882955
Alignment:
Q  208 ataatcaatgtatccggtcacatttatatgtcatatatattagttattcaatgtacctaaaaagt 272  Q
    ||||| |||||||  | |||||||||||| | | ||| ||||||||||||||| |||||||||||    
T  883019 ataattaatgtatttgatcacatttatatattaaatacattagttattcaatgaacctaaaaagt 882955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 7e-25; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 156 - 289
Target Start/End: Complemental strand, 38562271 - 38562137
Alignment:
Q  156 tactccctccgatcaaatttgtaagtaaaaatcaacatttcaaattcattgaataatcaatgtatccggtcacatttatatgtcatatatattagttatt 255  Q
    ||||||||||| ||| |||| |||| ||||| |||  ||| | || ||||||||||| |||||||||||||||||||||| | |||||| |||| |||||    
T  38562271 tactccctccggtcacatttataagcaaaaaacaattttttagatacattgaataattaatgtatccggtcacatttataggacatatacattaattatt 38562172  T
Q  256 caatgtacctaaaaag-tgttttttgcttataaat 289  Q
    ||||||| |||| ||| ||||||||||||||||||    
T  38562171 caatgtatctaacaagttgttttttgcttataaat 38562137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 204 - 289
Target Start/End: Original strand, 8678986 - 8679073
Alignment:
Q  204 ttgaataatcaatgtatccggtcacatttatatgtcatatatattagttattcaatgtacctaaaaagt--gttttttgcttataaat 289  Q
    ||||||||| ||||||||||||||||||||||||| | ||| ||||| ||||||||||||||||||| |   ||||||||||||||||    
T  8678986 ttgaataattaatgtatccggtcacatttatatgttagatacattaggtattcaatgtacctaaaaaattatttttttgcttataaat 8679073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 202 - 293
Target Start/End: Original strand, 6371956 - 6372048
Alignment:
Q  202 cattgaataatcaatgtatccggtcacatttatatgtcatatatattagttattcaatgtacct-aaaaagtgttttttgcttataaatatga 293  Q
    ||||||||||| |||||||  ||| ||||||||  || | ||| |||||||||| ||||||||| ||||| ||||||||||||||||||||||    
T  6371956 cattgaataattaatgtatatggttacatttatgggttagatacattagttattaaatgtacctaaaaaattgttttttgcttataaatatga 6372048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 206 - 289
Target Start/End: Original strand, 23673401 - 23673485
Alignment:
Q  206 gaataatcaatgtatccggtcacatttatatgtcatatatattagttattcaatgtacctaaaaag-tgttttttgcttataaat 289  Q
    ||||||| |||||||  |||||||| ||||||||| ||| |||| ||||||||| ||||||||||| | ||||||||||||||||    
T  23673401 gaataattaatgtatttggtcacatatatatgtcagatacattaattattcaatatacctaaaaagttattttttgcttataaat 23673485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 289
Target Start/End: Complemental strand, 52840379 - 52840279
Alignment:
Q  189 aacatttcaaattcattgaataatcaatgtatccggtcacatttatatgtcatatatattagttattcaatgtacct-aaaaagtgttttttgcttataa 287  Q
    ||||||| | ||||||| |||||| |||||||| |||||||||||||||| | ||| |||| ||||| ||||||| | ||||| | ||||||||||||||    
T  52840379 aacattttagattcattaaataattaatgtatc-ggtcacatttatatgttagatacattaattatttaatgtacttaaaaaattattttttgcttataa 52840281  T
Q  288 at 289  Q
    ||    
T  52840280 at 52840279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 301
Target Start/End: Original strand, 17236164 - 17236255
Alignment:
Q  208 ataatcaatgtatccggtcacatttatatgtcatatatattagttattcaatgtacctaaaaagtgttttttgcttataaatatgatcagagag 301  Q
    ||||| |||||||||||||||||||||| || | ||| |||| ||||||||  |||||||||| |  |||||| |||||||| ||||| |||||    
T  17236164 ataattaatgtatccggtcacatttataggttaaatacattaattattcaa--tacctaaaaaattgtttttgtttataaatgtgatcggagag 17236255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 289
Target Start/End: Complemental strand, 10065165 - 10065077
Alignment:
Q  202 cattgaataatcaatgtatccggtcacatttatatgtcatatatattagttattcaatgtacctaaaaag-tgttttttgcttataaat 289  Q
    ||||||||||| ||||||||||  || ||||||  || | ||| |||| |||||  |||||||||||||| ||||||||||||||||||    
T  10065165 cattgaataattaatgtatccgaccatatttatgagttagatacattaattattggatgtacctaaaaagttgttttttgcttataaat 10065077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 289
Target Start/End: Complemental strand, 20291921 - 20291793
Alignment:
Q  162 ctccgatcaaatttgtaagtaaaaatcaacatttcaaattcattgaataatcaatgtatccggtcacatttatatgtcatatatattagttattcaatgt 261  Q
    ||||||||| |||| |||| |||||  ||| ||| | ||| |||||||||  ||||||||| |||  | |||||  ||| ||| |||||||||| ||| |    
T  20291921 ctccgatcatatttataagcaaaaaataactttttagatttattgaataactaatgtatccagtcgtaattatagatcagatacattagttatttaatat 20291822  T
Q  262 acctaaaaagt-gttttttgcttataaat 289  Q
    || |||||||| |||||||||||||||||    
T  20291821 acttaaaaagttgttttttgcttataaat 20291793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 289
Target Start/End: Complemental strand, 33508587 - 33508543
Alignment:
Q  246 attagttattcaatgtaccta-aaaagtgttttttgcttataaat 289  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||    
T  33508587 attagttattcaatgtacctaaaaaattgttttttgcttataaat 33508543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 239 - 289
Target Start/End: Complemental strand, 6371977 - 6371926
Alignment:
Q  239 catatatattagttattcaatgtacctaaaaagt-gttttttgcttataaat 289  Q
    |||||| |||| ||||||||||||||||||||||  ||||||||||||||||    
T  6371977 catatacattaattattcaatgtacctaaaaagtcattttttgcttataaat 6371926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 295
Target Start/End: Original strand, 20783730 - 20783824
Alignment:
Q  202 cattgaataatcaatgtatccggtcacatttatatgtcatatatattagttattcaatgtacct-aaaaagtgttttttgcttataaatatgatc 295  Q
    ||||||||||| |||||||| | |||||||||| | | | ||| |||| |||||  |||||||| ||||| | |||||| |||||||||||||||    
T  20783730 cattgaataattaatgtatctgatcacatttatgtattaaatacattaattattggatgtacctaaaaaattattttttacttataaatatgatc 20783824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 289
Target Start/End: Original strand, 30920705 - 30920838
Alignment:
Q  157 actccctccgatcaaatttgtaagtaaaaatcaacatttcaaattcattgaataatcaatgtatccggtcacatttatatgtcatatatattagttattc 256  Q
    |||||||||| |||  ||| ||| || ||| |||| ||| || || |||||||||| |||||||||| ||| | |||||  | | |||||||||||||||    
T  30920705 actccctccggtcacttttataaatataaaacaactttttaagtttattgaataattaatgtatccgatcataattatagataaaatatattagttattc 30920804  T
Q  257 aatgtacct-aaaaagtgttttttgcttataaat 289  Q
    |||  || | ||||| | ||||||||||||||||    
T  30920805 aataaacttaaaaaattattttttgcttataaat 30920838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 289
Target Start/End: Original strand, 10065151 - 10065195
Alignment:
Q  246 attagttattcaatgtacctaaaaagt-gttttttgcttataaat 289  Q
    |||| ||||||||||||||||||||||  ||||||||||||||||    
T  10065151 attaattattcaatgtacctaaaaagtcattttttgcttataaat 10065195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 293
Target Start/End: Original strand, 32125423 - 32125471
Alignment:
Q  246 attagttattcaatgtacctaaaaagt-gttttttgcttataaatatga 293  Q
    ||||| ||||||||| ||||||||||| | |||||||||||||||||||    
T  32125423 attagatattcaatgaacctaaaaagtagatttttgcttataaatatga 32125471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 172 - 289
Target Start/End: Complemental strand, 7065714 - 7065596
Alignment:
Q  172 atttgtaagtaaaaatcaacatttcaaattcattgaataatcaatgtatccggtcacatttatatgtcatatatattagttattcaatgtacctaaaaag 271  Q
    |||| |||| |||||||||| ||| |||||||||||||||| |||||||| | |||||||||||||||  ||  ||||||||||||||||| ||||||||    
T  7065714 atttataagcaaaaatcaactttttaaattcattgaataattaatgtatctgatcacatttatatgtctgatgcattagttattcaatgtatctaaaaag 7065615  T
Q  272 -tgttttttgcttataaat 289  Q
     | ||||||| ||||||||    
T  7065614 ttcttttttgtttataaat 7065596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 155 - 272
Target Start/End: Complemental strand, 5865987 - 5865870
Alignment:
Q  155 gtactccctccgatcaaatttgtaagtaaaaatcaacatttcaaattcattgaataatcaatgtatccggtcacatttatatgtcatatatattagttat 254  Q
    |||||||||||| ||| |||| |||| ||||| ||   ||| |  |||||||||||||  || ||||||||||||||||||||| | ||| |||||||||    
T  5865987 gtactccctccggtcacatttataagcaaaaaacacatttttaggttcattgaataattgatatatccggtcacatttatatgttagatacattagttat 5865888  T
Q  255 tcaatgtacctaaaaagt 272  Q
    | ||||||||||||||||    
T  5865887 taaatgtacctaaaaagt 5865870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 165 - 306
Target Start/End: Original strand, 8355553 - 8355694
Alignment:
Q  165 cgatcaaatttgtaagtaaaaatcaacatttcaaattcattgaataatcaatgtatccggtcacatttatatgtcatatatattagttattcaatgtacc 264  Q
    |||||| |||| |||||||||||  | |||| ||||  ||| |||||| |||||||||| ||||||||||||||   ||| |||| ||||||| ||||      
T  8355553 cgatcacatttataagtaaaaattgatattttaaatatattaaataattaatgtatccgatcacatttatatgttggatacattaattattcattgtatt 8355652  T
Q  265 taaaaagtgttttttgcttataaatatgatcagagagaatat 306  Q
    ||||||||  ||||| ||||||||||| ||| ||||||||||    
T  8355653 taaaaagttgttttttcttataaatataatcggagagaatat 8355694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 202 - 289
Target Start/End: Original strand, 14751166 - 14751254
Alignment:
Q  202 cattgaataatcaatgtatccggtcacatttatatgtcatatatattagttattcaatgtacctaaaaag-tgttttttgcttataaat 289  Q
    ||||||||||| ||||||||| || ||||||||| || | ||| || |  |||||||||||||||||||| ||||||||||||||||||    
T  14751166 cattgaataattaatgtatccagttacatttataggttagatacatcaactattcaatgtacctaaaaagttgttttttgcttataaat 14751254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 156 - 295
Target Start/End: Original strand, 28499777 - 28499916
Alignment:
Q  156 tactccctccgatcaaatttgtaagtaaaaatcaacatttcaaattcattgaataatcaatgtatccggtcacatttatatgtcatatatattagttatt 255  Q
    ||||||||||| ||| |||| |||| |||||  ||  ||| | |||||||||||||  |||||||||||||| | |||||  | | ||| |||| |||||    
T  28499777 tactccctccggtcacatttataagcaaaaaataattttttagattcattgaataactaatgtatccggtcataattatagattaaatacattaattatt 28499876  T
Q  256 caatgtacctaaaaagtgttttttgcttataaatatgatc 295  Q
    |||| || |||||||||  ||||| ||||||||| |||||    
T  28499877 caatatatctaaaaagttattttttcttataaatgtgatc 28499916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 293
Target Start/End: Original strand, 28351029 - 28351077
Alignment:
Q  246 attagttattcaatgtacctaaaaagt-gttttttgcttataaatatga 293  Q
    ||||||||||||||| | ||||||||| |||||||||||||||||||||    
T  28351029 attagttattcaatgaatctaaaaagttgttttttgcttataaatatga 28351077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 307
Target Start/End: Complemental strand, 18551064 - 18550970
Alignment:
Q  214 aatgtatccggtcacatttatatgtcatatatattagttattcaatgtacctaaaaagt-gttttttgcttataaatatgatcagagagaatatt 307  Q
    |||||||  |||||||||| ||  ||| ||| ||||||||||||||| | ||||| ||| || |||||||||||||| ||| ||||| |||||||    
T  18551064 aatgtatttggtcacatttgtagatcaaatacattagttattcaatgaatctaaacagttgtgttttgcttataaatgtgaccagagggaatatt 18550970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 256
Target Start/End: Original strand, 25840570 - 25840668
Alignment:
Q  159 tccctccgatcaaatttgtaagtaaaaatcaacatttc-aaattcattgaataatcaatgtatccggtcacatttatatgtcatatatattagttattc 256  Q
    |||||||||||| |||| |||||||||| |||  |||  |||||||||||||||  |||||||  |||||||||||||  |||  || |||||||||||    
T  25840570 tccctccgatcacatttataagtaaaaaacaatttttttaaattcattgaataagtaatgtatttggtcacatttatagatcaactacattagttattc 25840668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 293
Target Start/End: Complemental strand, 11089394 - 11089296
Alignment:
Q  200 ttcattgaataatcaatgtatccggtcacatttatatgtcatatatattag----ttattcaatgtacct-aaaaagtgttttttgcttataaatatga 293  Q
    ||||| ||||||| ||| | ||||||||||||||||||| | ||| |||||    |||||||||||| || ||||| | ||||||| ||||||||||||    
T  11089394 ttcatcgaataattaatatttccggtcacatttatatgttagatacattagttaattattcaatgtatctaaaaaattattttttgattataaatatga 11089296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 289
Target Start/End: Original strand, 5865922 - 5865970
Alignment:
Q  242 atatattagttattcaatgtacctaaaaa-gtgttttttgcttataaat 289  Q
    |||||| | |||||||||| ||||||||| |||||||||||||||||||    
T  5865922 atatatcaattattcaatgaacctaaaaatgtgttttttgcttataaat 5865970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 294
Target Start/End: Complemental strand, 20269541 - 20269449
Alignment:
Q  202 cattgaataatcaatgtatccggtcacatttatatgtcatatatattagttattcaatgtacctaaaaagtgttttttgcttataaatatgat 294  Q
    ||||||||||| |||||||   |||| |||| || |||| ||| || | ||||||||| || |||||||||  ||||| ||||||||||||||    
T  20269541 cattgaataattaatgtatttcgtcatatttgtaggtcagatacatcaattattcaatatatctaaaaagttgttttttcttataaatatgat 20269449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 299
Target Start/End: Original strand, 35463992 - 35464091
Alignment:
Q  200 ttcattgaataatcaatgtatccggtcacatttatatgtcatatatattagttattcaatgtacctaaaaagt-gttttttgcttataaatatgatcaga 298  Q
    ||||||||||||  |||||||||||||  || ||||||| | ||| ||||| || |||| | ||||||||||| |  ||||||||||||||||||| |||    
T  35463992 ttcattgaataactaatgtatccggtct-atatatatgttagatacattagctactcaaagaacctaaaaagttgccttttgcttataaatatgataaga 35464090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 203 - 289
Target Start/End: Original strand, 29212885 - 29212972
Alignment:
Q  203 attgaataatcaatgtatccggtcacatttatatgtcatatatattagttattcaatgtacct-aaaaagtgttttttgcttataaat 289  Q
    |||||||||||||||||||| |||||||||||| |||| ||| |||| ||||||||||||||| |||||  |||||||||||||||||    
T  29212885 attgaataatcaatgtatccagtcacatttataggtcagatacattaattattcaatgtacctaaaaaacagttttttgcttataaat 29212972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 246 - 299
Target Start/End: Complemental strand, 16867673 - 16867619
Alignment:
Q  246 attagttattcaatgtacctaaaaag-tgttttttgcttataaatatgatcagag 299  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||| |||||    
T  16867673 attagttattcaatgtacctaaaaagttgttttttgcttataaatgtgaccagag 16867619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 289
Target Start/End: Original strand, 18093814 - 18093907
Alignment:
Q  197 aaattcattgaataatcaatgtatccggtcacatttatatgtcatatatattagttattcaatgtacctaaaaa-gtgttttttgcttataaat 289  Q
    |||| ||||||||||| ||||||||  |||||||||||| |||| ||| |||| |||||||||  |||||||||  ||||| ||||||||||||    
T  18093814 aaatacattgaataattaatgtatcttgtcacatttataggtcagatacattaattattcaataaacctaaaaacttgtttattgcttataaat 18093907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 223 - 289
Target Start/End: Complemental strand, 8266510 - 8266442
Alignment:
Q  223 ggtcacatttatatgtcatatatattagttattcaatgtacctaaaaagt--gttttttgcttataaat 289  Q
    |||||||||||||||||  ||| || |||||||||||||||||||||| |   ||||||||||||||||    
T  8266510 ggtcacatttatatgtctaatacataagttattcaatgtacctaaaaaattgtttttttgcttataaat 8266442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 207 - 289
Target Start/End: Complemental strand, 55121268 - 55121185
Alignment:
Q  207 aataatcaatgtatccggtcacatttatatgtcatatatattagttattcaatgtacct-aaaaagtgttttttgcttataaat 289  Q
    |||||| |||||||  |||||||||||||   || ||| ||||||||||||||| |||| ||||| ||||||||| ||||||||    
T  55121268 aataattaatgtatttggtcacatttataaaccaaatacattagttattcaatgaacctaaaaaattgttttttgtttataaat 55121185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 295
Target Start/End: Original strand, 27786537 - 27786591
Alignment:
Q  242 atatattagttattcaatgtacctaaaaag-tgttttttgcttataaatatgatc 295  Q
    ||||||||| ||||||||| |||||||||| ||| |||||||||||||| |||||    
T  27786537 atatattaggtattcaatgaacctaaaaagttgtgttttgcttataaatgtgatc 27786591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 272
Target Start/End: Complemental strand, 1779638 - 1779523
Alignment:
Q  156 tactccctccgatcaaatttgtaagtaaaaatcaacatttcaaattcattgaataatcaatgtatccggtcacatttatatgtcatatatattagttatt 255  Q
    ||||||||||||||| || | |||  ||||| |||| ||| | || ||||||||||| |||  ||  ||||||||||| | |||| ||| || | |||||    
T  1779638 tactccctccgatcacatatataaacaaaaaccaactttttagatacattgaataattaatcaataaggtcacattta-aggtcaaatacatcaattatt 1779540  T
Q  256 caatgtacctaaaaagt 272  Q
    |||||||||||||||||    
T  1779539 caatgtacctaaaaagt 1779523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 295
Target Start/End: Original strand, 16867613 - 16867753
Alignment:
Q  156 tactccctccgatcaaatttgtaagtaaaaatcaacatttcaaattcattgaataatcaatgtatccggtcacatttatatgtcatatatattagttatt 255  Q
    ||||||||| | ||| |||| |||| ||||| |||| ||| |  | ||||||||||  |||| || |||||| ||||||  || | ||| || | |||||    
T  16867613 tactccctctggtcacatttataagcaaaaaacaactttttaggtacattgaataactaatgcattcggtcatatttatgggttagatacatcaattatt 16867712  T
Q  256 caatgtacctaaaaagt-gttttttgcttataaatatgatc 295  Q
      ||||||||||||||| ||||||||||||||||| |||||    
T  16867713 ggatgtacctaaaaagttgttttttgcttataaatgtgatc 16867753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 270
Target Start/End: Complemental strand, 19790870 - 19790754
Alignment:
Q  154 tgtactccctccgatcaaatttgtaagtaaaaatcaacatttcaaattcattgaataatcaatgtatccggtcacatttatatgtcatatatattagtta 253  Q
    ||||||||||||| ||| |||| |||||||||| ||   ||| | || ||||||||| |  |||||| |  ||||||||||| || |  || |||| |||    
T  19790870 tgtactccctccggtcacatttataagtaaaaaacacttttttagatacattgaatacttgatgtatgcaatcacatttataggtaaggtacattaatta 19790771  T
Q  254 ttcaatgtacctaaaaa 270  Q
    |||||||||||||||||    
T  19790770 ttcaatgtacctaaaaa 19790754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 202 - 293
Target Start/End: Original strand, 40737864 - 40737955
Alignment:
Q  202 cattgaataatcaatgtatccggtcacatttatatgtcatatatattagttattcaatgtacct-aaaaagtgttttttgcttataaatatga 293  Q
    ||||||||||| |||||||||||||||||||| | |||| ||| |||| ||||||||||||||| ||||| | ||||||||||||||||||||    
T  40737864 cattgaataattaatgtatccggtcacattta-aggtcagatacattaattattcaatgtacctaaaaaactattttttgcttataaatatga 40737955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 202 - 270
Target Start/End: Complemental strand, 24185631 - 24185563
Alignment:
Q  202 cattgaataatcaatgtatccggtcacatttatatgtcatatatattagttattcaatgtacctaaaaa 270  Q
    ||||||||||| ||||||||| |||||||||||| || | |||||||| |||||||||||| |||||||    
T  24185631 cattgaataattaatgtatccagtcacatttataggttagatatattaattattcaatgtatctaaaaa 24185563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 202 - 262
Target Start/End: Complemental strand, 429865 - 429805
Alignment:
Q  202 cattgaataatcaatgtatccggtcacatttatatgtcatatatattagttattcaatgta 262  Q
    ||||||||||||||||||| | |||||||||||| |||| |||||||| | ||||||||||    
T  429865 cattgaataatcaatgtattcagtcacatttataggtcaaatatattaataattcaatgta 429805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 155 - 302
Target Start/End: Complemental strand, 14113359 - 14113211
Alignment:
Q  155 gtactccctccgatcaaatttgtaagtaaaaatcaacatttcaaattcattgaataatcaatgtatccggtcacatttatatgtcatatatattagttat 254  Q
    ||||||||| || ||| |||| ||||||||||   || ||| | || ||||||||||| ||||||| |||||||||||||  || | ||| |||| ||||    
T  14113359 gtactcccttcggtcatatttctaagtaaaaaatgactttttagatacattgaataattaatgtatacggtcacatttatgggttagatacattaattat 14113260  T
Q  255 tcaatgtacctaaaaag-tgttttttgcttataaatatgatcagagaga 302  Q
    |  |||||||||||||| | ||||||||||| |||| ||| | ||||||    
T  14113259 tggatgtacctaaaaagttattttttgcttagaaatgtgaccggagaga 14113211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 197 - 293
Target Start/End: Original strand, 44329193 - 44329291
Alignment:
Q  197 aaattcattgaataatcaatgtatccggtcacatttatatgtcatatatattagttattcaatgtacctaaaaagt--gttttttgcttataaatatga 293  Q
    |||| ||||||||||| |||||||  ||||||||||||  || | ||| |||| |||||  |||||||||||||||   ||||||||||||||||||||    
T  44329193 aaatacattgaataattaatgtatttggtcacatttatgggttagatacattaattattggatgtacctaaaaagttgtttttttgcttataaatatga 44329291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 202 - 299
Target Start/End: Original strand, 1784130 - 1784228
Alignment:
Q  202 cattgaataatcaatgtatccggtcacatttatatgtcatatatattagttattcaatgtacctaaaaag-tgttttttgcttataaatatgatcagag 299  Q
    ||||||||| | |||||||||||||| ||||||  || | ||| |||| |||||  ||||| |||||||| |||||||||||||||||| ||| |||||    
T  1784130 cattgaatatttaatgtatccggtcatatttatgggttagatacattaattattagatgtatctaaaaagttgttttttgcttataaatgtgaccagag 1784228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 289
Target Start/End: Complemental strand, 6590882 - 6590794
Alignment:
Q  202 cattgaataatcaatgtatccggtcacatttatatgtcatatatattagttattcaatgtacctaaaaag-tgttttttgcttataaat 289  Q
    ||||||||||| |||||||||||||| ||||||  || | ||| |||  |||||  |||||||||| ||| ||||||||||||||||||    
T  6590882 cattgaataattaatgtatccggtcatatttatgggttagatacattgattattggatgtacctaagaagttgttttttgcttataaat 6590794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 272
Target Start/End: Original strand, 18147850 - 18147922
Alignment:
Q  200 ttcattgaataatcaatgtatccggtcacatttatatgtcatatatattagttattcaatgtacctaaaaagt 272  Q
    ||||||||||||  ||||||||| |||| | ||||| |||| ||| || ||||||||||| ||||||||||||    
T  18147850 ttcattgaataactaatgtatccagtcataattataggtcagatacatgagttattcaatatacctaaaaagt 18147922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 246 - 304
Target Start/End: Original strand, 6590868 - 6590927
Alignment:
Q  246 attagttattcaatgtacctaaaaagt-gttttttgcttataaatatgatcagagagaat 304  Q
    |||| ||||||||||||||||||||||  |||||||||||||||| ||| ||||| ||||    
T  6590868 attaattattcaatgtacctaaaaagtaattttttgcttataaatgtgaccagagggaat 6590927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 6649158 - 6649205
Alignment:
Q  246 attagttattcaatgtacctaaaaagt-gttttttgcttataaatatg 292  Q
    |||| ||||||||||||||||||||||  |||||||||||||||||||    
T  6649158 attaattattcaatgtacctaaaaagtcattttttgcttataaatatg 6649205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 202 - 289
Target Start/End: Complemental strand, 42158480 - 42158394
Alignment:
Q  202 cattgaataatcaatgtatccggtcacatttatatgtcatatatattagttattcaatgtacctaaaaagtgttttttgcttataaat 289  Q
    ||||||||||| ||||||||| |||||||||||  || | ||| |||| |||||  |||||||||||||||  ||||| |||||||||    
T  42158480 cattgaataattaatgtatccagtcacatttatgagttagatacatta-ttattggatgtacctaaaaagttgttttttcttataaat 42158394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 295
Target Start/End: Complemental strand, 8168983 - 8168911
Alignment:
Q  225 tcacatttatatgtcatatatattagttattcaatgtacctaaaaag-tgtttttt-gcttataaatatgatc 295  Q
    |||||||||||  ||| ||| |||| ||||||||||||| ||||||  |||||||| ||||||||||||||||    
T  8168983 tcacatttatagatcagatacattaattattcaatgtacataaaaaactgtttttttgcttataaatatgatc 8168911  T

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Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 298
Target Start/End: Original strand, 30542503 - 30542599
Alignment:
Q  203 attgaataatcaatgtatccggtcacatttatatgtcatatatattagttattcaatgtacct-aaaaagtgttttttgcttataaatatgatcaga 298  Q
    |||||||||| ||| |||  ||| ||||||| | || | |||||||| ||||||||||||| | ||||| ||||||||  |||||||||||| ||||    
T  30542503 attgaataattaatatatttggttacatttaaaggttaaatatattaattattcaatgtacttaaaaaattgttttttatttataaatatgaccaga 30542599  T

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Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 203 - 279
Target Start/End: Complemental strand, 6071978 - 6071902
Alignment:
Q  203 attgaataatcaatgtatccggtcacatttatatgtcatatatattagttattcaatgtacctaaaaagtgtttttt 279  Q
    |||||||||| ||||||| |||||| |||||||| ||| |||||||||||||| ||||||| |||||||| ||||||    
T  6071978 attgaataattaatgtattcggtcatatttatatctcagatatattagttatttaatgtacttaaaaagtttttttt 6071902  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 200 - 270
Target Start/End: Original strand, 31159116 - 31159186
Alignment:
Q  200 ttcattgaataatcaatgtatccggtcacatttatatgtcatatatattagttattcaatgtacctaaaaa 270  Q
    ||||||||||||| ||||||| ||||||||||||||||| | ||| |||||||||||||| ||| ||||||    
T  31159116 ttcattgaataattaatgtattcggtcacatttatatgttagatacattagttattcaatatacttaaaaa 31159186  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 216 - 289
Target Start/End: Original strand, 862877 - 862950
Alignment:
Q  216 tgtatccggtcacatttatatgtcatatatattagttattcaatgtacctaaaaagtgttttttgcttataaat 289  Q
    ||||||| |||||||||||| || | ||| |||| |||||||||||| ||||||| ||||||||||||||||||    
T  862877 tgtatccagtcacatttataggttagatacattaattattcaatgtatctaaaaaatgttttttgcttataaat 862950  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 203 - 299
Target Start/End: Original strand, 24252928 - 24253020
Alignment:
Q  203 attgaataatcaatgtatccggtcacatttatatgtcatatatattagttattcaatgtacctaaaaag-tgttttttgcttataaatatgatcagag 299  Q
    |||||||||| ||||||| ||||||||||||||      ||| |||| ||||||||||||||||||||| | |||||||||||||||||||| |||||    
T  24252928 attgaataattaatgtattcggtcacatttatag-----atacattaattattcaatgtacctaaaaagttattttttgcttataaatatgaccagag 24253020  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 302
Target Start/End: Original strand, 1392485 - 1392582
Alignment:
Q  205 tgaataatcaatgtatccggtcacatttatatgtcatatatattagttattcaatgtacctaaaaagtgttttttgcttataaatatgatcagagaga 302  Q
    |||||||| ||| |||||  |||||||||||||||| ||| ||||||||||| |||||  ||| || |  ||||||||||||||| |||| |||||||    
T  1392485 tgaataattaatatatccaatcacatttatatgtcagatacattagttattcgatgtatttaacaaattgtttttgcttataaatgtgataagagaga 1392582  T

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Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 200 - 294
Target Start/End: Complemental strand, 29400766 - 29400673
Alignment:
Q  200 ttcattgaataatcaatgtatccggtcacatttatatgtcatatatattagttattcaatgtacctaaaaag-tgttttttgcttataaatatgat 294  Q
    ||||||||| ||| ||||||| | ||||||||||||  ||| |||  ||||||||||||||||| ||||||| ||||||||| |||||||||||||    
T  29400766 ttcattgaa-aattaatgtattcagtcacatttatagatcagatac-ttagttattcaatgtacttaaaaagttgttttttgtttataaatatgat 29400673  T

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Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 299
Target Start/End: Complemental strand, 5069995 - 5069941
Alignment:
Q  246 attagttattcaatgtacctaaaaagt-gttttttgcttataaatatgatcagag 299  Q
    |||| |||||||||||| ||||||||| ||||||||||||||||| |||||||||    
T  5069995 attaattattcaatgtatctaaaaagttgttttttgcttataaatgtgatcagag 5069941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 293
Target Start/End: Complemental strand, 862874 - 862829
Alignment:
Q  249 agttattcaatgtacctaaaaagt-gttttttgcttataaatatga 293  Q
    ||||||||||||||||||||||||   |||||||||||||||||||    
T  862874 agttattcaatgtacctaaaaagtcaatttttgcttataaatatga 862829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 289
Target Start/End: Original strand, 674131 - 674179
Alignment:
Q  242 atatattagttattcaatgtacct-aaaaagtgttttttgcttataaat 289  Q
    ||||||||||||||||||| | || ||||| ||||||||||||||||||    
T  674131 atatattagttattcaatgaatctaaaaaattgttttttgcttataaat 674179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 295
Target Start/End: Original strand, 2271196 - 2271260
Alignment:
Q  232 tatatgtcatatatattagttattcaatgtacctaaaaagtg-ttttttgcttataaatatgatc 295  Q
    ||||||||| ||| ||||||| ||||||| | |||||||||  |||||||||||||||| |||||    
T  2271196 tatatgtcaaatacattagttgttcaatgaatctaaaaagttattttttgcttataaatgtgatc 2271260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 224
Target Start/End: Original strand, 5069935 - 5070003
Alignment:
Q  156 tactccctccgatcaaatttgtaagtaaaaatcaacatttcaaattcattgaataatcaatgtatccgg 224  Q
    ||||||||| ||||| |||| |||| ||||| |||| ||| | || ||||||||||| |||||||||||    
T  5069935 tactccctctgatcacatttataagcaaaaaacaactttttagatacattgaataattaatgtatccgg 5070003  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 202 - 286
Target Start/End: Complemental strand, 43445129 - 43445045
Alignment:
Q  202 cattgaataatcaatgtatccggtcacatttatatgtcatatatattagttattcaatgtacctaaaaagtgttttttgcttata 286  Q
    ||||||||||| |||||||||||||||||||||  || | ||| |||| ||||| ||| ||||||||||||  ||||||||||||    
T  43445129 cattgaataattaatgtatccggtcacatttatgggttagatacattaattattgaatatacctaaaaagttgtttttgcttata 43445045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 156 - 289
Target Start/End: Complemental strand, 41517509 - 41517375
Alignment:
Q  156 tactccctccgatcaaatttgtaagtaaaaatcaacatttcaaattcattgaataatcaatgtatccggtcacatttatatgtcatatatattagttatt 255  Q
    ||||||||||| ||| |||| |||| |||||  ||| ||| || | ||||||||||| |||||||||| ||||||||||  || | ||| |||| || ||    
T  41517509 tactccctccggtcacatttataagcaaaaaataactttttaagtacattgaataattaatgtatccgatcacatttatgggttagatacattaattctt 41517410  T
Q  256 caatgtacctaaaaag-tgttttttgcttataaat 289  Q
      |||||||||||||| || |||||||||||||||    
T  41517409 ggatgtacctaaaaagttggtttttgcttataaat 41517375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 289
Target Start/End: Complemental strand, 11565088 - 11565012
Alignment:
Q  214 aatgtatccggtcacatttatatgtcatatatattagttattcaatgtacctaaaaag-tgttttttgcttataaat 289  Q
    ||||||||| ||||||||||||  |||  || |||| |||||||||||| |||||| | ||||||||||||||||||    
T  11565088 aatgtatccagtcacatttatagatcaggtacattaattattcaatgtatctaaaatgttgttttttgcttataaat 11565012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 293
Target Start/End: Complemental strand, 14725310 - 14725218
Alignment:
Q  202 cattgaataatcaatgtatccggtcacatttatatgtcatatatattagttattcaatgtacctaaaaag-tgttttttgcttataaatatga 293  Q
    ||||||||||| |||||||||| ||| ||||||  || | ||| |||| |||||  ||||| |||||||| ||||||||| ||||||||||||    
T  14725310 cattgaataattaatgtatccgatcagatttatgagttagatacattaattattagatgtatctaaaaagttgttttttgtttataaatatga 14725218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 270
Target Start/End: Original strand, 33956327 - 33956395
Alignment:
Q  202 cattgaataatcaatgtatccggtcacatttatatgtcatatatattagttattcaatgtacctaaaaa 270  Q
    ||||||||||| |||||||||||||| ||||||| || | ||| |||| ||||||||| || |||||||    
T  33956327 cattgaataattaatgtatccggtcatatttataagttagatacattaattattcaatatatctaaaaa 33956395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 272
Target Start/End: Original strand, 25931618 - 25931683
Alignment:
Q  207 aataatcaatgtatccggtcacatttatatgtcatatatattagttattcaatgtacctaaaaagt 272  Q
    |||||| |||||||  |||||||||||||  ||| ||| ||| ||||||||||| |||||||||||    
T  25931618 aataattaatgtatttggtcacatttatagatcaaatacattggttattcaatgaacctaaaaagt 25931683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 644101 - 644141
Alignment:
Q  232 tatatgtcatatatattagttattcaatgtacctaaaaagt 272  Q
    |||| |||||||| ||||||||||||||| |||||||||||    
T  644101 tataggtcatatacattagttattcaatgaacctaaaaagt 644141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 270
Target Start/End: Original strand, 43336540 - 43336584
Alignment:
Q  226 cacatttatatgtcatatatattagttattcaatgtacctaaaaa 270  Q
    |||||||||| |||| ||| ||||||||||||||||| |||||||    
T  43336540 cacatttataggtcaaatacattagttattcaatgtatctaaaaa 43336584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0514 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 295
Target Start/End: Complemental strand, 5875 - 5825
Alignment:
Q  246 attagttattcaatgtacctaaaaagt-gttttttgcttataaatatgatc 295  Q
    |||||||||||||||||||||||||||  |||||||||||||||| |||||    
T  5875 attagttattcaatgtacctaaaaagtcattttttgcttataaatgtgatc 5825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0777 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0777
Description:

Target: scaffold0777; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 260
Target Start/End: Complemental strand, 4807 - 4753
Alignment:
Q  206 gaataatcaatgtatccggtcacatttatatgtcatatatattagttattcaatg 260  Q
    ||||||| ||||||||  ||||||||||||| ||| ||| |||||||||||||||    
T  4807 gaataattaatgtatctagtcacatttatatatcaaatacattagttattcaatg 4753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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