View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4791-Insertion-6 (Length: 311)

Name: NF4791-Insertion-6
Description: NF4791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4791-Insertion-6
NF4791-Insertion-6
[»] chr6 (17 HSPs)
chr6 (8-311)||(26505605-26505917)
chr6 (94-311)||(23220652-23220871)
chr6 (163-311)||(17857530-17857678)
chr6 (156-311)||(16375278-16375433)
chr6 (156-266)||(17084398-17084509)
chr6 (94-261)||(29161494-29161662)
chr6 (170-289)||(22463243-22463363)
chr6 (210-291)||(4172724-4172805)
chr6 (210-311)||(4228313-4228414)
chr6 (182-289)||(22594452-22594559)
chr6 (182-268)||(34965863-34965949)
chr6 (158-311)||(26523317-26523470)
chr6 (217-289)||(10445428-10445500)
chr6 (260-311)||(18104659-18104710)
chr6 (184-230)||(31162090-31162136)
chr6 (170-273)||(32351021-32351125)
chr6 (197-261)||(19853144-19853209)
[»] chr2 (19 HSPs)
chr2 (95-311)||(22331670-22331889)
chr2 (156-311)||(43641731-43641886)
chr2 (156-311)||(45618415-45618570)
chr2 (171-311)||(24561867-24562007)
chr2 (176-311)||(29113242-29113377)
chr2 (170-311)||(19434574-19434715)
chr2 (101-289)||(18534785-18534975)
chr2 (94-268)||(6093784-6093960)
chr2 (197-311)||(24840855-24840969)
chr2 (218-311)||(20272424-20272518)
chr2 (197-268)||(24276832-24276904)
chr2 (176-268)||(25133127-25133220)
chr2 (217-289)||(23799536-23799608)
chr2 (94-149)||(45618691-45618745)
chr2 (196-267)||(9635743-9635815)
chr2 (199-268)||(22787186-22787256)
chr2 (44-86)||(24301833-24301875)
chr2 (49-82)||(23167326-23167359)
chr2 (49-82)||(23578583-23578616)
[»] scaffold0317 (1 HSPs)
scaffold0317 (94-309)||(14849-15066)
[»] chr5 (12 HSPs)
chr5 (94-311)||(21108460-21108679)
chr5 (94-311)||(14342763-14342982)
chr5 (94-311)||(20455101-20455312)
chr5 (156-311)||(24226581-24226737)
chr5 (94-289)||(11964901-11965098)
chr5 (156-311)||(33627502-33627656)
chr5 (156-265)||(23414148-23414257)
chr5 (182-267)||(16836465-16836549)
chr5 (170-273)||(26560942-26561046)
chr5 (182-267)||(23235608-23235693)
chr5 (182-267)||(19872815-19872900)
chr5 (170-273)||(5622583-5622687)
[»] chr1 (15 HSPs)
chr1 (182-311)||(77058-77187)
chr1 (171-311)||(20822018-20822158)
chr1 (182-268)||(33396342-33396428)
chr1 (170-288)||(40437406-40437524)
chr1 (94-271)||(21224134-21224313)
chr1 (182-268)||(20193048-20193134)
chr1 (217-289)||(34392210-34392282)
chr1 (184-288)||(52400260-52400365)
chr1 (182-268)||(5769343-5769429)
chr1 (182-268)||(8539111-8539197)
chr1 (182-268)||(8604350-8604436)
chr1 (190-268)||(21194095-21194174)
chr1 (37-79)||(16244478-16244520)
chr1 (198-261)||(5471560-5471624)
chr1 (184-267)||(49998472-49998556)
[»] chr4 (22 HSPs)
chr4 (94-311)||(5371695-5371913)
chr4 (156-311)||(12134748-12134903)
chr4 (164-311)||(17376556-17376703)
chr4 (156-311)||(17212967-17213122)
chr4 (171-311)||(54364568-54364708)
chr4 (181-289)||(24237839-24237947)
chr4 (156-268)||(49070752-49070864)
chr4 (171-268)||(12733092-12733189)
chr4 (156-311)||(19558347-19558502)
chr4 (155-268)||(16226313-16226425)
chr4 (182-268)||(47469475-47469561)
chr4 (182-268)||(50221093-50221179)
chr4 (182-267)||(41917896-41917981)
chr4 (156-283)||(9651248-9651376)
chr4 (182-267)||(13593872-13593957)
chr4 (182-289)||(10238565-10238671)
chr4 (184-273)||(38763734-38763824)
chr4 (184-297)||(19082193-19082306)
chr4 (49-86)||(27783509-27783546)
chr4 (182-268)||(15014429-15014515)
chr4 (27-86)||(21962059-21962117)
chr4 (176-268)||(18240891-18240984)
[»] scaffold0013 (1 HSPs)
scaffold0013 (176-311)||(8226-8361)
[»] chr8 (24 HSPs)
chr8 (94-289)||(25756940-25757137)
chr8 (94-289)||(25294920-25295117)
chr8 (156-307)||(3845146-3845297)
chr8 (156-309)||(19332614-19332768)
chr8 (184-306)||(20176985-20177107)
chr8 (184-306)||(20221712-20221834)
chr8 (199-311)||(11543571-11543683)
chr8 (98-289)||(45560236-45560429)
chr8 (210-308)||(18119041-18119139)
chr8 (182-288)||(17500969-17501074)
chr8 (94-309)||(22312620-22312836)
chr8 (182-289)||(22498407-22498514)
chr8 (182-289)||(22886807-22886914)
chr8 (197-268)||(18042671-18042743)
chr8 (131-289)||(24238581-24238742)
chr8 (184-288)||(7469206-7469311)
chr8 (184-289)||(24906839-24906944)
chr8 (182-266)||(33171211-33171295)
chr8 (185-288)||(38636798-38636902)
chr8 (182-265)||(16001044-16001127)
chr8 (181-259)||(25609175-25609254)
chr8 (39-86)||(25281295-25281342)
chr8 (44-82)||(24383193-24383231)
chr8 (182-232)||(37654832-37654881)
[»] chr7 (31 HSPs)
chr7 (156-311)||(39292780-39292935)
chr7 (94-308)||(21675957-21676173)
chr7 (156-308)||(15979104-15979256)
chr7 (94-308)||(28719406-28719622)
chr7 (163-311)||(3193184-3193332)
chr7 (94-311)||(8564622-8564841)
chr7 (184-306)||(44306224-44306346)
chr7 (94-286)||(16382499-16382693)
chr7 (182-311)||(18080719-18080847)
chr7 (210-306)||(17985978-17986074)
chr7 (211-311)||(16369437-16369537)
chr7 (156-265)||(13617748-13617857)
chr7 (97-268)||(4483682-4483855)
chr7 (182-265)||(14276103-14276185)
chr7 (156-311)||(21539234-21539390)
chr7 (182-268)||(9322193-9322279)
chr7 (245-311)||(46473026-46473092)
chr7 (184-288)||(14939731-14939836)
chr7 (184-288)||(15367324-15367429)
chr7 (170-254)||(19066519-19066603)
chr7 (217-289)||(36301409-36301481)
chr7 (210-273)||(12183010-12183073)
chr7 (199-289)||(13350982-13351072)
chr7 (217-289)||(38294814-38294886)
chr7 (182-267)||(9643289-9643374)
chr7 (197-268)||(20584032-20584104)
chr7 (211-246)||(13463343-13463378)
chr7 (220-289)||(33556819-33556888)
chr7 (10-46)||(19382099-19382135)
chr7 (156-268)||(45148558-45148670)
chr7 (94-127)||(16369660-16369693)
[»] scaffold0183 (1 HSPs)
scaffold0183 (94-311)||(9762-9983)
[»] scaffold0017 (1 HSPs)
scaffold0017 (94-308)||(11532-11750)
[»] chr3 (22 HSPs)
chr3 (171-309)||(8603651-8603790)
chr3 (181-288)||(38376831-38376938)
chr3 (165-311)||(37917474-37917620)
chr3 (94-291)||(11401526-11401725)
chr3 (197-289)||(14181133-14181225)
chr3 (165-309)||(40040225-40040369)
chr3 (156-308)||(25105076-25105226)
chr3 (157-311)||(17759438-17759593)
chr3 (157-311)||(19060758-19060913)
chr3 (94-233)||(5229188-5229329)
chr3 (210-271)||(14969895-14969956)
chr3 (181-265)||(17319733-17319818)
chr3 (156-288)||(43428670-43428802)
chr3 (217-289)||(12918084-12918156)
chr3 (170-273)||(21167870-21167974)
chr3 (217-289)||(45804098-45804170)
chr3 (182-268)||(33370012-33370098)
chr3 (37-83)||(11833742-11833788)
chr3 (27-86)||(10933341-10933399)
chr3 (49-86)||(12794223-12794260)
chr3 (176-268)||(11516638-11516730)
chr3 (54-86)||(16280301-16280333)
[»] scaffold0601 (1 HSPs)
scaffold0601 (165-294)||(2119-2247)
[»] scaffold0090 (5 HSPs)
scaffold0090 (182-311)||(35806-35934)
scaffold0090 (94-254)||(1317-1479)
scaffold0090 (94-254)||(5697-5859)
scaffold0090 (249-311)||(4373-4435)
scaffold0090 (249-297)||(4-52)
[»] scaffold0079 (1 HSPs)
scaffold0079 (197-311)||(5122-5234)
[»] scaffold0009 (1 HSPs)
scaffold0009 (197-306)||(255399-255508)
[»] scaffold0057 (1 HSPs)
scaffold0057 (176-268)||(4890-4982)
[»] scaffold0231 (1 HSPs)
scaffold0231 (208-311)||(13962-14065)
[»] scaffold1278 (1 HSPs)
scaffold1278 (184-311)||(500-627)
[»] scaffold0174 (1 HSPs)
scaffold0174 (197-311)||(21084-21198)
[»] scaffold1957 (1 HSPs)
scaffold1957 (209-311)||(911-1013)
[»] scaffold0047 (1 HSPs)
scaffold0047 (176-311)||(76010-76143)
[»] scaffold0153 (1 HSPs)
scaffold0153 (176-268)||(811-903)
[»] scaffold1204 (2 HSPs)
scaffold1204 (94-254)||(1276-1438)
scaffold1204 (275-311)||(1239-1275)
[»] scaffold0088 (1 HSPs)
scaffold0088 (182-266)||(44739-44823)
[»] scaffold0452 (1 HSPs)
scaffold0452 (214-311)||(8537-8634)
[»] scaffold0357 (1 HSPs)
scaffold0357 (184-288)||(6682-6787)
[»] scaffold0049 (1 HSPs)
scaffold0049 (156-268)||(34591-34703)
[»] scaffold0561 (1 HSPs)
scaffold0561 (182-268)||(3963-4049)
[»] scaffold0028 (2 HSPs)
scaffold0028 (212-311)||(39134-39233)
scaffold0028 (44-82)||(39480-39518)
[»] scaffold0258 (1 HSPs)
scaffold0258 (219-311)||(9120-9213)
[»] scaffold0126 (1 HSPs)
scaffold0126 (54-86)||(17095-17127)
[»] scaffold0305 (1 HSPs)
scaffold0305 (44-83)||(1246-1285)
[»] scaffold0193 (1 HSPs)
scaffold0193 (197-259)||(3641-3703)
[»] scaffold0165 (1 HSPs)
scaffold0165 (209-266)||(20996-21054)
[»] scaffold0035 (1 HSPs)
scaffold0035 (44-86)||(34350-34392)


Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 8 - 311
Target Start/End: Original strand, 26505605 - 26505917
Alignment:
Q  8 caaattagcatgtataaactcaccatcaacattcaacatcatttgaatgtaataattcaacaacataattcatcatcatgatttagca------------ 95  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||                
T  26505605 caaattagcatgtataaactcaccatcaacattcaacatcatttgcatgtaataattcaacaacataattcatcatcatgatttaacatatgtggattca 26505704  T
Q  96 ccaacaatatcaccattaattaacatatatgcaagtaatcaacatcaacaatattattaccaa-caattccatataatttttcacgatccaagtaaatga 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||   || ||||||| |||||||||||||||||||    
T  26505705 ccaacaatatcaccattaattaacatatatgcaagtaatcaacatcaacaacattattaccactcaa---caaataatttctcacgatccaagtaaatga 26505801  T
Q  195 ggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaacaatccacaaaagatttgccaa 294  Q
    | |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  26505802 gaaaatacaacacatt-tgataaacatcatattcaacacctaacaatcattcacatatcttcatttaatcatatcaaactatccacaaaagatttgccaa 26505900  T
Q  295 gtaattggtcttaaaga 311  Q
    |||||||||||||||||    
T  26505901 gtaattggtcttaaaga 26505917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 94 - 311
Target Start/End: Original strand, 23220652 - 23220871
Alignment:
Q  94 caccaacaatatcaccattaattaacatatatgcaagtaatcaacatcaacaatattat-tac--caacaattccatataatttttcacgatccaagtaa 190  Q
    ||||||||||||||| || ||| ||||||||||||  |||||||||||||| |||| || ||   |||||| || ||||||||| |||| || |||||||    
T  23220652 caccaacaatatcacaatcaatcaacatatatgcat-taatcaacatcaactatatcatatagttcaacaactc-atataatttctcacaattcaagtaa 23220749  T
Q  191 atgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaacaatcca-caaaagattt 289  Q
    | ||| ||||  ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||| ||||||||  |||||  |||||||||    
T  23220750 aggagaaaatgaaacacattatgataaacatcatattaaacacctagaaatcattcacatatcttcatataataatatcaaattatccagaaaaagattt 23220849  T
Q  290 gccaagtaattggtcttaaaga 311  Q
    | |||||| |||||||||||||    
T  23220850 ggcaagtatttggtcttaaaga 23220871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 163 - 311
Target Start/End: Complemental strand, 17857678 - 17857530
Alignment:
Q  163 tccatataatttttcacgatccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaa 262  Q
    |||||| || || |||| || ||||||||  || |||||||||||||||||||||| ||||| |||||||||||   |||||| |||||||||||| |||    
T  17857678 tccatacaagttctcacaattcaagtaaagaagaaaatacaacacattatgataaatatcatgttcaacacctagctatcattaacatatcttcatataa 17857579  T
Q  263 tcatatcaaacaatccacaaaagatttgccaagtaattggtcttaaaga 311  Q
    ||||||||||| ||||| ||||||||||||||||| |||||||||||||    
T  17857578 tcatatcaaactatccaaaaaagatttgccaagtatttggtcttaaaga 17857530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 156 - 311
Target Start/End: Original strand, 16375278 - 16375433
Alignment:
Q  156 caacaattccatataatttttcacgatccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatctt 255  Q
    |||||| | |||| ||||| |||| || |||||||| ||| |||||||||||| ||||||||||||||||||| ||||||| |||||||||||| |||||    
T  16375278 caacaacttcatacaatttctcacaattcaagtaaaggagaaaatacaacacactatgataaacatcatattccacacctagaaatcattcacacatctt 16375377  T
Q  256 catttaatcatatcaaacaatccacaaaagatttgccaagtaattggtcttaaaga 311  Q
    ||| |||||||||||||| |||| ||||| ||||  |||||| | |||||||||||    
T  16375378 catataatcatatcaaactatccccaaaatatttttcaagtattaggtcttaaaga 16375433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 156 - 266
Target Start/End: Complemental strand, 17084509 - 17084398
Alignment:
Q  156 caacaattccatataatttttcacgatccaagtaaatgaggaaatacaacacattatgataaacatcatattcaa-cacctaaaaatcattcacatatct 254  Q
    |||||| |||||| ||||| |||| || |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  17084509 caacaactccatacaatttctcacaatacaagtaaatgagaaaatacaacacattatgataaacatcatattcaatcacctaaaaagcattcacatatct 17084410  T
Q  255 tcatttaatcat 266  Q
    |||| |||||||    
T  17084409 tcatataatcat 17084398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 94 - 261
Target Start/End: Complemental strand, 29161662 - 29161494
Alignment:
Q  94 caccaacaatatcaccattaattaacatatatgcaagtaatcaacatcaacaatattat-tac--caacaattccatataatttttcacgatccaagtaa 190  Q
    |||||||||||||| ||| ||||||||||||||||| || ||||||||||| |||| || ||   | |||| |||||||| |||||||| ||||||||||    
T  29161662 caccaacaatatcatcatcaattaacatatatgcaa-tattcaacatcaactatatcatatagttcgacaactccatatactttttcac-atccaagtaa 29161565  T
Q  191 atgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcattta 261  Q
    | ||| ||||||  ||||||||||||||||||||||||||||| ||| ||| | |||||||||||||||||    
T  29161564 aggagaaaatacttcacattatgataaacatcatattcaacacttaacaattactcacatatcttcattta 29161494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 170 - 289
Target Start/End: Complemental strand, 22463363 - 22463243
Alignment:
Q  170 aatttttcacgatccaagtaaatgaggaaa-tacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatat 268  Q
    ||||| |||| ||||||||||| ||||||| |||||||| |||||||||||||||||||||| |||| | ||| | ||||||||||||||| ||||||||    
T  22463363 aatttctcacaatccaagtaaaggaggaaaatacaacaccttatgataaacatcatattcaagacctcacaattactcacatatcttcattcaatcatat 22463264  T
Q  269 caaacaatccacaaaagattt 289  Q
     || | || ||||||||||||    
T  22463263 aaagctattcacaaaagattt 22463243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 210 - 291
Target Start/End: Complemental strand, 4172805 - 4172724
Alignment:
Q  210 tatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaacaatccacaaaagatttgc 291  Q
    |||||||||||||||||||||||||||  ||||||||| | |||||||| ||||||| |||||| || ||||||||||||||    
T  4172805 tatgataaacatcatattcaacacctatcaatcattcatacatcttcatataatcatgtcaaactattcacaaaagatttgc 4172724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 210 - 311
Target Start/End: Complemental strand, 4228414 - 4228313
Alignment:
Q  210 tatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaacaatccacaaaagatttgccaagtaattggtcttaaa 309  Q
    |||||||||||||||||||||||||||  ||||||||| | || ||||| ||||||| |||||| || |||||||||||||| |  || | |||||||||    
T  4228414 tatgataaacatcatattcaacacctatcaatcattcatacatattcatataatcatgtcaaactattcacaaaagatttgcaagatattcggtcttaaa 4228315  T
Q  310 ga 311  Q
    ||    
T  4228314 ga 4228313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 289
Target Start/End: Complemental strand, 22594559 - 22594452
Alignment:
Q  182 tccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaa-aaatcattcacatatcttcatttaatcatatcaaacaatccac 280  Q
    |||||||||| ||||||||||||||| ||||||| |||||||||| |||||||||| || ||| ||| |||||||||| ||||||||| || | || ||     
T  22594559 tccaagtaaa-gaggaaatacaacaccttatgatgaacatcatatccaacacctaacaagtcactcaaatatcttcatataatcatataaatctattcat 22594461  T
Q  281 aaaagattt 289  Q
    |||||||||    
T  22594460 aaaagattt 22594452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 182 - 268
Target Start/End: Original strand, 34965863 - 34965949
Alignment:
Q  182 tccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaa-aaatcattcacatatcttcatttaatcatat 268  Q
    |||||||||| ||| ||||| ||||| |||||||||| ||||||||||||| |||| || ||||| ||||||||||||||||||||||    
T  34965863 tccaagtaaa-gagaaaataaaacaccttatgataaatatcatattcaacatctaacaattcatttacatatcttcatttaatcatat 34965949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 158 - 311
Target Start/End: Complemental strand, 26523470 - 26523317
Alignment:
Q  158 acaattccatataatttttcacgatccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaaa-aatcattcacatatcttc 256  Q
    |||||| |||||||||| |||| || |||||||   | |||||||| || | ||| |||  |||||||||||||||||||  ||||||||||| ||||||    
T  26523470 acaatttcatataatttctcacaattcaagtaacgaaagaaatacatcatactattatat-catcatattcaacacctaactaatcattcacacatcttc 26523372  T
Q  257 atttaatcatatcaaacaatccacaaaagatttgccaagtaattggtcttaaaga 311  Q
     | |||||||||||| | || |||||||||||||  ||||| | |||||||||||    
T  26523371 gtataatcatatcaagctatacacaaaagatttgaaaagtactcggtcttaaaga 26523317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 217 - 289
Target Start/End: Original strand, 10445428 - 10445500
Alignment:
Q  217 aacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaacaatccacaaaagattt 289  Q
    ||||||||||||||||| ||  ||||||||| |||||| ||| |||||||||||||  |||||||||||||||    
T  10445428 aacatcatattcaacacatagcaatcattcaaatatctccatataatcatatcaaattatccacaaaagattt 10445500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 260 - 311
Target Start/End: Complemental strand, 18104710 - 18104659
Alignment:
Q  260 taatcatatcaaacaatccacaaaagatttgccaagtaattggtcttaaaga 311  Q
    |||||||||||||| |||||| |||||||||||||||| ||| |||||||||    
T  18104710 taatcatatcaaactatccacgaaagatttgccaagtatttgatcttaaaga 18104659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 230
Target Start/End: Complemental strand, 31162136 - 31162090
Alignment:
Q  184 caagtaaatgaggaaatacaacacattatgataaacatcatattcaa 230  Q
    |||||||| ||| ||||||||||| ||||||||||||||||||||||    
T  31162136 caagtaaaggagaaaatacaacaccttatgataaacatcatattcaa 31162090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 273
Target Start/End: Original strand, 32351021 - 32351125
Alignment:
Q  170 aatttttcacgatccaagtaaatgaggaaa-tacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatat 268  Q
    ||||| |||| ||||| ||||| ||||||| |||||||| || |||||||| ||| ||||||||| ||  | | | ||||||||||||||| ||||||||    
T  32351021 aatttgtcaccatccacgtaaaagaggaaaatacaacaccttgtgataaacctcacattcaacacttaccatttactcacatatcttcattcaatcatat 32351120  T
Q  269 caaac 273  Q
     ||||    
T  32351121 aaaac 32351125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 261
Target Start/End: Original strand, 19853144 - 19853209
Alignment:
Q  197 aaatacaacacattatgataaacatcatattcaacacctaa-aaatcattcacatatcttcattta 261  Q
    |||||||||||  ||||||||| ||||||| |||||| ||| || ||||||||| |||||||||||    
T  19853144 aaatacaacaccctatgataaatatcatatccaacacttaacaattcattcacacatcttcattta 19853209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 106; Significance: 5e-53; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 95 - 311
Target Start/End: Original strand, 22331670 - 22331889
Alignment:
Q  95 accaacaatatcaccattaattaacatatatgcaagtaatcaacatcaacaatattat-tac--caacaattccatataatttttcacgatccaagtaaa 191  Q
    ||||||||||||||||| |||||| |||||||||  |||||||||| ||| |||| || ||   |||||| |||||| ||||| |||| || ||||||||    
T  22331670 accaacaatatcaccatcaattaatatatatgcat-taatcaacataaactatatcatatagttcaacaactccatacaatttctcacaatacaagtaaa 22331768  T
Q  192 tgaggaaatacaacacattatgataaacatcatattcaa-cacctaaaaatcattcacatatcttcatttaatcatatcaaacaatccacaaaagatttg 290  Q
     ||| | |||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  22331769 ggagaagatacaacacattatgataaacatcatattcaatcacctagaaagcattcacatatcttcatataatcatatcaaactatccacaaaagatttg 22331868  T
Q  291 ccaagtaattggtcttaaaga 311  Q
    ||||||| |||||||||||||    
T  22331869 ccaagtatttggtcttaaaga 22331889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 156 - 311
Target Start/End: Original strand, 43641731 - 43641886
Alignment:
Q  156 caacaattccatataatttttcacgatccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatctt 255  Q
    |||||| |||||| ||||| |||| || |||||||| ||| ||||||||||||||||||||||||||||||||||||| |  ||| ||||||||||||||    
T  43641731 caacaactccatacaatttctcacaattcaagtaaaggagaaaatacaacacattatgataaacatcatattcaacacatgtaaagcattcacatatctt 43641830  T
Q  256 catttaatcatatcaaacaatccacaaaagatttgccaagtaattggtcttaaaga 311  Q
    ||| |||||||||||||| ||| |||| |||||||||||||| |||||||||||||    
T  43641831 catataatcatatcaaactatctacaatagatttgccaagtatttggtcttaaaga 43641886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 156 - 311
Target Start/End: Original strand, 45618415 - 45618570
Alignment:
Q  156 caacaattccatataatttttcacgatccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatctt 255  Q
    |||||| | |||| ||||| |||| || |||||||| ||| |||||||||||||||||||||| |||||||||||||| || ||| ||||||||||||||    
T  45618415 caacaacttcatacaatttctcacaattcaagtaaaagagaaaatacaacacattatgataaaaatcatattcaacacgtagaaagcattcacatatctt 45618514  T
Q  256 catttaatcatatcaaacaatccacaaaagatttgccaagtaattggtcttaaaga 311  Q
    ||| |||||||||||||  ||||||||||||||| |||||||||||||||||||||    
T  45618515 catataatcatatcaaattatccacaaaagatttaccaagtaattggtcttaaaga 45618570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 171 - 311
Target Start/End: Complemental strand, 24562007 - 24561867
Alignment:
Q  171 atttttcacgatccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatca 270  Q
    |||| |||| ||||||||||| ||| ||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||    
T  24562007 atttctcacaatccaagtaaaggagaaaatacaacaccttatgataaacatcatattcaacatctaacaatcattcacatatcttcatataatcatatca 24561908  T
Q  271 aacaatccacaaaagatttgccaagtaattggtcttaaaga 311  Q
    ||||||| ||||||||||| | ||||| |||||| ||||||    
T  24561907 aacaatctacaaaagattttctaagtatttggtcctaaaga 24561867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 176 - 311
Target Start/End: Original strand, 29113242 - 29113377
Alignment:
Q  176 tcacgatccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaacaa 275  Q
    |||| |||||| |||| ||| ||||||  ||||||||||||||||||||||||| ||||||  |||||| ||||||||||||| |||||||| ||||| |    
T  29113242 tcacaatccaaataaaggagaaaatacttcacattatgataaacatcatattcatcacctagcaatcatccacatatcttcatataatcataacaaacta 29113341  T
Q  276 tccacaaaagatttgccaagtaattggtcttaaaga 311  Q
    | ||||||||||||||||||||||||||||||||||    
T  29113342 ttcacaaaagatttgccaagtaattggtcttaaaga 29113377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 170 - 311
Target Start/End: Complemental strand, 19434715 - 19434574
Alignment:
Q  170 aatttttcacgatccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatc 269  Q
    ||||| |||| || |||||||| ||| |||||||| |||||||||||||||||||||||||||  |  ||| ||||||||||||||||| ||||||||||    
T  19434715 aatttctcacaattcaagtaaaggagaaaatacaatacattatgataaacatcatattcaacatatgtaaagcattcacatatcttcatataatcatatc 19434616  T
Q  270 aaacaatccacaaaagatttgccaagtaattggtcttaaaga 311  Q
    |||| ||| |||| ||||||||||| || |||||||||||||    
T  19434615 aaactatctacaatagatttgccaattatttggtcttaaaga 19434574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 101 - 289
Target Start/End: Original strand, 18534785 - 18534975
Alignment:
Q  101 aatatcaccattaattaacatatatgcaagtaatcaacatcaacaatattat-tac--caacaattccatataatttttcacgatccaagtaaatgagga 197  Q
    |||||||| || ||| ||||||||||||  |||||||||||||| |||| || ||   |||||| |||||||||||| |||| || |||||||| ||| |    
T  18534785 aatatcacaatcaatcaacatatatgcat-taatcaacatcaactatatcatatagttcaacaactccatataatttctcacaattcaagtaaaggagaa 18534883  T
Q  198 aatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaacaatccacaaaagattt 289  Q
    |||||||||||||||||||| ||||||||||||||| |  ||| ||||||||||||||||| ||||||||| || | || ||| ||||||||    
T  18534884 aatacaacacattatgataatcatcatattcaacacatgtaaaacattcacatatcttcatataatcatataaagctattcacgaaagattt 18534975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 94 - 268
Target Start/End: Original strand, 6093784 - 6093960
Alignment:
Q  94 caccaacaatatcaccattaattaacatatatgcaagtaatcaacatcaacaatattat-tac--caacaattccatataatttttcacgatccaagtaa 190  Q
    |||||||||||||  ||| ||||||||||||||||| || ||||||  ||| |||| || ||   |||||| |||||||| ||| |||| ||||||||||    
T  6093784 caccaacaatatcctcatcaattaacatatatgcaa-tattcaacaataactatatcatatagttcaacaactccatatactttctcacaatccaagtaa 6093882  T
Q  191 atgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatat 268  Q
    | ||| ||||||  | ||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||    
T  6093883 aggagaaaatacttcgcattatgataaacatcatattcaacacctaacaattactcacatatcttcatttaatcatat 6093960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 197 - 311
Target Start/End: Original strand, 24840855 - 24840969
Alignment:
Q  197 aaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaacaatccacaaaagatttgccaagt 296  Q
    |||||||||||||||||||||| |||||||| || ||||| |||  || ||||||| ||||| |||| |||  |||| ||||||||||||||||||||||    
T  24840855 aaatacaacacattatgataaaaatcatattaaaaacctagaaaggatgcacatatattcatataataatagaaaactatccacaaaagatttgccaagt 24840954  T
Q  297 aattggtcttaaaga 311  Q
    | |||||||||||||    
T  24840955 atttggtcttaaaga 24840969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 218 - 311
Target Start/End: Original strand, 20272424 - 20272518
Alignment:
Q  218 acatcatattcaacacctaaaaat-cattcacatatcttcatttaatcatatcaaacaatccacaaaagatttgccaagtaattggtcttaaaga 311  Q
    |||| ||||||||||||||||||| ||||||||||||||||| |||||||| ||||| |||||||| ||||||| ||| || || ||||||||||    
T  20272424 acattatattcaacacctaaaaattcattcacatatcttcatataatcataacaaactatccacaagagatttgtcaattatttagtcttaaaga 20272518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 197 - 268
Target Start/End: Original strand, 24276832 - 24276904
Alignment:
Q  197 aaatacaacacattatgataaacatcatattcaacacctaaaaa-tcattcacatatcttcatttaatcatat 268  Q
    |||||||||||  ||||||||| ||||||| ||||||||||||| ||||||||| ||||||||||| ||||||    
T  24276832 aaatacaacaccctatgataaatatcatatccaacacctaaaaattcattcacacatcttcatttagtcatat 24276904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 268
Target Start/End: Original strand, 25133127 - 25133220
Alignment:
Q  176 tcacgatccaagtaaatgaggaaa-tacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatat 268  Q
    |||| ||||||||||| ||||||| |||||||| || |||||||||||| ||||||||| ||| | | | ||||| ||||||||| ||||||||    
T  25133127 tcaccatccaagtaaaggaggaaaatacaacaccttgtgataaacatcacattcaacacttaacatttactcacacatcttcattcaatcatat 25133220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 217 - 289
Target Start/End: Original strand, 23799536 - 23799608
Alignment:
Q  217 aacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaacaatccacaaaagattt 289  Q
    ||||||||||||||||||||  ||||||||| |||||  ||| |||||||||||||  |||||||||| ||||    
T  23799536 aacatcatattcaacacctagcaatcattcaaatatccccatataatcatatcaaattatccacaaaatattt 23799608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 149
Target Start/End: Complemental strand, 45618745 - 45618691
Alignment:
Q  94 caccaacaatatcaccattaattaacatatatgcaagtaatcaacatcaacaatat 149  Q
    |||||||||||||||||| ||||||||||||||| | |||||||||||||| ||||    
T  45618745 caccaacaatatcaccatcaattaacatatatgc-attaatcaacatcaactatat 45618691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 267
Target Start/End: Original strand, 9635743 - 9635815
Alignment:
Q  196 gaaatacaacacattatgataaacatcatattcaacacctaaaaa-tcattcacatatcttcatttaatcata 267  Q
    |||||||| ||| |||| || |||||||||| |||||||||| || ||| ||||||| |||||||||||||||    
T  9635743 gaaatacatcaccttataatgaacatcatatccaacacctaacaagtcactcacataacttcatttaatcata 9635815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 268
Target Start/End: Complemental strand, 22787256 - 22787186
Alignment:
Q  199 atacaacacattatgataaacatcatattcaacacctaa-aaatcattcacatatcttcatttaatcatat 268  Q
    ||||||||  |||||||||| |||||||||||||  ||| || ||||||||| ||||||||||| ||||||    
T  22787256 atacaacatcttatgataaatatcatattcaacatataacaattcattcacacatcttcatttagtcatat 22787186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 86
Target Start/End: Original strand, 24301833 - 24301875
Alignment:
Q  44 catcatttgaatgtaataattcaacaacataattcatcatcat 86  Q
    ||||||||  |||||||||||||||||||||| ||||||||||    
T  24301833 catcattttcatgtaataattcaacaacataaatcatcatcat 24301875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 82
Target Start/End: Complemental strand, 23167359 - 23167326
Alignment:
Q  49 tttgaatgtaataattcaacaacataattcatca 82  Q
    |||| |||||||||||||||||||||||||||||    
T  23167359 tttgcatgtaataattcaacaacataattcatca 23167326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 82
Target Start/End: Complemental strand, 23578616 - 23578583
Alignment:
Q  49 tttgaatgtaataattcaacaacataattcatca 82  Q
    |||| |||||||||||||||||||||||||||||    
T  23578616 tttgcatgtaataattcaacaacataattcatca 23578583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 94 - 309
Target Start/End: Complemental strand, 15066 - 14849
Alignment:
Q  94 caccaacaatatcaccattaattaacatatatgcaagtaatcaacatcaacaatattat-tac--caacaattccatataatttttcacgatccaagtaa 190  Q
    |||||||||||||||||| ||||||||||||||||  ||||| |||||||| |||| || ||   |||||| |||||||||||| |||| || |||||||    
T  15066 caccaacaatatcaccatcaattaacatatatgcat-taatcgacatcaactatatcatatagttcaacaactccatataatttctcacaattcaagtaa 14968  T
Q  191 atgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaacaatccacaaaagatttg 290  Q
    | ||| |||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||| |||| | || ||||||||| ||||||||||||||||    
T  14967 aggagaaaatacaacacattatgataaacatcatattcaacacctagaaaacattgacatatcgtcatatgattatatcaaactatccacaaaagatttg 14868  T
Q  291 ccaagtaattggtcttaaa 309  Q
     |||||| |||||||||||    
T  14867 tcaagtatttggtcttaaa 14849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 3e-48; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 94 - 311
Target Start/End: Original strand, 21108460 - 21108679
Alignment:
Q  94 caccaacaatatcaccattaattaacatatatgcaagtaatcaacatcaacaatattat-tac--caacaattccatataatttttcacgatccaagtaa 190  Q
    ||||||||||||||| || ||| |||||||||| || || ||||||||||| |||| || ||   |||||| |||||||| ||| |||| ||||||||||    
T  21108460 caccaacaatatcacaatcaatcaacatatatgtaa-tattcaacatcaactatatcatatagttcaacaactccatatactttctcacaatccaagtaa 21108558  T
Q  191 atgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaacaatccacaaaagatttg 290  Q
    | ||| ||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||| | ||| |||| |||||||||||    
T  21108559 aggagaaaatacaacaccttatggtaaacatcatattcaacacctaacaatcattcacatatcttcatataatcataacgaactatccgcaaaagatttg 21108658  T
Q  291 ccaagtaattggtcttaaaga 311  Q
     |||||| |||||||||||||    
T  21108659 acaagtatttggtcttaaaga 21108679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 94 - 311
Target Start/End: Complemental strand, 14342982 - 14342763
Alignment:
Q  94 caccaacaatatcaccattaattaacatatatgcaagtaatcaacatcaacaatat--tattac-caacaattccatataatttttcacgatccaagtaa 190  Q
    |||||||||||||  ||| ||||||||||||||||  || ||||||||||| ||||  ||||   |||||| ||||||  |||| |||| || ||| |||    
T  14342982 caccaacaatatcctcatcaattaacatatatgcat-tattcaacatcaactatatcatattgttcaacaactccataccatttctcacaattcaattaa 14342884  T
Q  191 atgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaacaatccacaaaagatttg 290  Q
      ||| ||||||||||||||||||||||||||||||||||||| ||| ||| |  |||||||||||||||||||| ||||||| ||||||| ||||||||    
T  14342883 tggagaaaatacaacacattatgataaacatcatattcaacacttaacaattacccacatatcttcatttaatcacatcaaactatccacacaagatttg 14342784  T
Q  291 ccaagtaattggtcttaaaga 311  Q
    |||| || |||||||||||||    
T  14342783 ccaaatatttggtcttaaaga 14342763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 94 - 311
Target Start/End: Complemental strand, 20455312 - 20455101
Alignment:
Q  94 caccaacaatatcaccattaattaacatatatgcaagtaatcaacatcaacaatattat-tac--caacaattccatataatttttcacgatccaagtaa 190  Q
    ||||||||||||||| || ||| ||||||||||||  |||||||||||||| |||| || ||   |||||| |||||  | ||| |||| || |||||||    
T  20455312 caccaacaatatcacaatcaatcaacatatatgcat-taatcaacatcaactatatcatatagttcaacaactccattcagtttctcacaattcaagtaa 20455214  T
Q  191 atgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaacaatccacaaaagatttg 290  Q
    | ||| ||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||        ||||||||||| ||||||||||||||||    
T  20455213 aggagaaaatacaacacattatgataaacatcatattcaacacttagaaaacattcacatatct--------tcatatcaaactatccacaaaagatttg 20455122  T
Q  291 ccaagtaattggtcttaaaga 311  Q
    ||||||| ||| |||||||||    
T  20455121 ccaagtatttgctcttaaaga 20455101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 156 - 311
Target Start/End: Complemental strand, 24226737 - 24226581
Alignment:
Q  156 caacaattccatataatttttcacgatccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatctt 255  Q
    |||||| |||||| ||||| |||| || |||||||| ||| || || ||||||||||||||||||||||||||||||| |  ||| ||||||||||||||    
T  24226737 caacaactccatacaatttctcacaattcaagtaaaggagaaagtaaaacacattatgataaacatcatattcaacacatgtaaagcattcacatatctt 24226638  T
Q  256 catttaatcatatcaaac-aatccacaaaagatttgccaagtaattggtcttaaaga 311  Q
    ||| |||||||||||||| |||| | || |||||||||||||| |||||||||||||    
T  24226637 catataatcatatcaaactaatctataatagatttgccaagtatttggtcttaaaga 24226581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 94 - 289
Target Start/End: Original strand, 11964901 - 11965098
Alignment:
Q  94 caccaacaatatcaccattaattaacatatatgcaagtaatcaacatcaacaatattattac---caacaattccatataatttttcacgatccaagtaa 190  Q
    |||| ||||||||||  | ||| ||||||||||||  |||||||||||||| ||||||||     |||||| | |||| ||||| |||| || |||||||    
T  11964901 caccgacaatatcacactcaatcaacatatatgcat-taatcaacatcaactatattatttagttcaacaacttcatacaatttctcacaattcaagtaa 11964999  T
Q  191 atgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaacaatccacaaaagattt 289  Q
    | ||| ||||||||||||||||||||||||||||||||||||| |  ||| ||||||||||||||||| ||||||||| || | || ||| ||||||||    
T  11965000 aggagaaaatacaacacattatgataaacatcatattcaacacatgtaaagcattcacatatcttcatataatcatataaagctattcacgaaagattt 11965098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 156 - 311
Target Start/End: Complemental strand, 33627656 - 33627502
Alignment:
Q  156 caacaattccatataatttttcacgatccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatctt 255  Q
    |||||| |||||| |||||||||  || |||||||| ||| |||||||||||| ||||||||||| |||||||||||| || |   |||||||||||||     
T  33627656 caacaactccatacaatttttcataatacaagtaaaggagaaaatacaacacactatgataaaca-catattcaacacttagagggcattcacatatctc 33627558  T
Q  256 catttaatcatatcaaacaatccacaaaagatttgccaagtaattggtcttaaaga 311  Q
    ||| |||||||| ||||  |||||||||| |||||| ||||| ||| |||||||||    
T  33627557 catataatcataacaaattatccacaaaaaatttgctaagtatttgatcttaaaga 33627502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 156 - 265
Target Start/End: Original strand, 23414148 - 23414257
Alignment:
Q  156 caacaattccatataatttttcacgatccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatctt 255  Q
    |||||| |||||| | ||| ||||  |||||||||| ||| ||||||||||| |||| |||||||||||||||| ||||||| ||||||||| |||||||    
T  23414148 caacaactccatacactttctcacattccaagtaaaggagaaaatacaacaccttataataaacatcatattcagcacctaacaatcattcaaatatctt 23414247  T
Q  256 catttaatca 265  Q
     |||||||||    
T  23414248 aatttaatca 23414257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 182 - 267
Target Start/End: Complemental strand, 16836549 - 16836465
Alignment:
Q  182 tccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcata 267  Q
    |||||||||| ||||||||||||||| ||||||| |||||||||| |||  ||||| ||||||| ||||||||| |||||||||||    
T  16836549 tccaagtaaa-gaggaaatacaacaccttatgatgaacatcatatccaatgcctaacaatcattaacatatctttatttaatcata 16836465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 170 - 273
Target Start/End: Complemental strand, 26561046 - 26560942
Alignment:
Q  170 aatttttcacgatccaagtaaatgaggaaa-tacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatat 268  Q
    ||||| |||| ||||||||||| ||||||| |||||||| || |||||||| ||| ||||||||||||  | | | ||||||||||||||| ||||||||    
T  26561046 aatttgtcaccatccaagtaaaagaggaaaatacaacaccttgtgataaacctcacattcaacacctaccatttactcacatatcttcattcaatcatat 26560947  T
Q  269 caaac 273  Q
     ||||    
T  26560946 aaaac 26560942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 182 - 267
Target Start/End: Complemental strand, 23235693 - 23235608
Alignment:
Q  182 tccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaa-aaatcattcacatatcttcatttaatcata 267  Q
    |||||||||| || |||||||||||| ||||||| |||||||||| ||||| |||| || ||||||||||| ||| |||||||||||    
T  23235693 tccaagtaaa-gatgaaatacaacaccttatgatgaacatcatatccaacatctaacaagtcattcacataactttatttaatcata 23235608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 267
Target Start/End: Original strand, 19872815 - 19872900
Alignment:
Q  182 tccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcata 267  Q
    |||||||||| ||| |||||  |||| |||||||||||||||||||| |||| ||| |||||||    ||||||||||||||||||    
T  19872815 tccaagtaaaggagaaaatatcacaccttatgataaacatcatattccacacttaacaatcatttctttatcttcatttaatcata 19872900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 170 - 273
Target Start/End: Complemental strand, 5622687 - 5622583
Alignment:
Q  170 aatttttcacgatccaagtaaatgaggaaa-tacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatat 268  Q
    ||||| |||| ||||||||||| ||||||| |||||||  || |||||||| ||| ||||||||||||  | | | ||||||||||||||| ||||||||    
T  5622687 aatttgtcaccatccaagtaaaagaggaaaatacaacatcttgtgataaacctcacattcaacacctaccatttactcacatatcttcattcaatcatat 5622588  T
Q  269 caaac 273  Q
     ||||    
T  5622587 aaaac 5622583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 3e-48; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 182 - 311
Target Start/End: Complemental strand, 77187 - 77058
Alignment:
Q  182 tccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaacaatccaca 281  Q
    |||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||| |||||||    
T  77187 tccaagtaaaagagaaaatacaacactttatgataaacatcatattcaacacctaacaatcattcacatatcttcatataatcataacaaactatccaca 77088  T
Q  282 aaagatttgccaagtaattggtcttaaaga 311  Q
    |||||||||||||||| |||||||||||||    
T  77087 aaagatttgccaagtatttggtcttaaaga 77058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 171 - 311
Target Start/End: Original strand, 20822018 - 20822158
Alignment:
Q  171 atttttcacgatccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatca 270  Q
    |||| |||| |||||| |||| ||| ||||||  ||||||||||||||||| ||||||||||||||  |||||| ||||||||||||| |||||||| ||    
T  20822018 atttctcacaatccaaataaaggagaaaatacttcacattatgataaacattatattcaacacctagcaatcatccacatatcttcatataatcataaca 20822117  T
Q  271 aacaatccacaaaagatttgccaagtaattggtcttaaaga 311  Q
    ||| |||||||||| |||||| ||||| |||||||||||||    
T  20822118 aactatccacaaaatatttgcaaagtatttggtcttaaaga 20822158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 182 - 268
Target Start/End: Original strand, 33396342 - 33396428
Alignment:
Q  182 tccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatat 268  Q
    |||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||  |||||||||||||||||||| |||||||||    
T  33396342 tccaagtaaatgagaaaatacaacaccttacgataaacatcatattcaacacctagcaatcattcacatatcttcatataatcatat 33396428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 170 - 288
Target Start/End: Complemental strand, 40437524 - 40437406
Alignment:
Q  170 aatttttcacgatccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatc 269  Q
    ||||| |||| ||||||||||| |||||||||||| || |||||||||||||||| |||||||||||| ||| | ||||||| ||||||||||||||||     
T  40437524 aatttctcacaatccaagtaaaggaggaaatacaataccttatgataaacatcatgttcaacacctaacaattactcacataacttcatttaatcatata 40437425  T
Q  270 aaacaatccacaaaagatt 288  Q
    ||   || |||||||||||    
T  40437424 aagttattcacaaaagatt 40437406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 94 - 271
Target Start/End: Original strand, 21224134 - 21224313
Alignment:
Q  94 caccaacaatatcaccattaattaacatatatgcaagtaatcaacatcaacaatattattac----caacaattccatataatttttcacgatccaagta 189  Q
    |||||||||||||||||| ||||| | |||||| || ||||||||| |||| | || |||||    |||||| |||||| ||||| |||| || ||||||    
T  21224134 caccaacaatatcaccatcaattagcttatatgtaa-taatcaacaacaactacatcattacatctcaacaactccatacaatttctcacaattcaagta 21224232  T
Q  190 aatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaa 271  Q
    || ||| ||   || || |||||||||  |||||||||||||||| || |||||||||||||||||||| |||| |||||||    
T  21224233 aaggagaaagcgcaccatattatgatat-catcatattcaacacccaataatcattcacatatcttcatgtaattatatcaa 21224313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 182 - 268
Target Start/End: Original strand, 20193048 - 20193134
Alignment:
Q  182 tccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatat 268  Q
    |||||||||| ||| |||| |||||| ||||||||||||||||||||||| | ||| ||||||  | ||||||||||||||||||||    
T  20193048 tccaagtaaaggagaaaatgcaacaccttatgataaacatcatattcaacgcttaacaatcatctaaatatcttcatttaatcatat 20193134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 217 - 289
Target Start/End: Original strand, 34392210 - 34392282
Alignment:
Q  217 aacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaacaatccacaaaagattt 289  Q
    ||||||||||||||||||||  ||||||||| |||||| ||| |||||||||||||  |||||||||||||||    
T  34392210 aacatcatattcaacacctagcaatcattcaaatatctccatataatcatatcaaattatccacaaaagattt 34392282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 184 - 288
Target Start/End: Original strand, 52400260 - 52400365
Alignment:
Q  184 caagtaaatgaggaaa-tacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaacaatccacaa 282  Q
    |||||||| ||||||| |||||||| |||||||||| ||||||||||| |||| | ||| | ||||||||||||| | |||||||| |||| |  |||||    
T  52400260 caagtaaaggaggaaaatacaacaccttatgataaatatcatattcaagacctcacaattagtcacatatcttcactcaatcatataaaactaatcacaa 52400359  T
Q  283 aagatt 288  Q
    ||||||    
T  52400360 aagatt 52400365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 268
Target Start/End: Complemental strand, 5769429 - 5769343
Alignment:
Q  182 tccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaa-tcattcacatatcttcatttaatcatat 268  Q
    |||||||||| ||| |||| |||||| |||||||||| ||||||||| ||| |||| || ||||||||||||||||||||| ||||||    
T  5769429 tccaagtaaa-gagaaaatgcaacaccttatgataaatatcatattcgacatctaacaactcattcacatatcttcatttagtcatat 5769343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 268
Target Start/End: Complemental strand, 8539197 - 8539111
Alignment:
Q  182 tccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaa-aaatcattcacatatcttcatttaatcatat 268  Q
    |||||||||| ||| ||||||||||| |||||||||| ||||||| |||||  ||| || ||||||||| ||||||||||| ||||||    
T  8539197 tccaagtaaa-gagaaaatacaacacgttatgataaatatcatatccaacatataacaattcattcacacatcttcatttagtcatat 8539111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 268
Target Start/End: Complemental strand, 8604436 - 8604350
Alignment:
Q  182 tccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaa-aaatcattcacatatcttcatttaatcatat 268  Q
    |||||||||| ||| ||||||||||| |||||||||| ||||||| |||||  ||| || ||||||||| ||||||||||| ||||||    
T  8604436 tccaagtaaa-gagaaaatacaacacgttatgataaatatcatatccaacatataacaattcattcacacatcttcatttagtcatat 8604350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 268
Target Start/End: Original strand, 21194095 - 21194174
Alignment:
Q  190 aatgaggaaatacaacacattatgataaacatcatattcaacaccta-aaaatcattcacatatcttcatttaatcatat 268  Q
    |||||| ||||||||||| |||||||||| ||||||| |||||  ||  || ||||||||| ||||||||||| ||||||    
T  21194095 aatgagaaaatacaacactttatgataaatatcatatccaacatatatcaattcattcacacatcttcatttagtcatat 21194174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 79
Target Start/End: Original strand, 16244478 - 16244520
Alignment:
Q  37 cattcaacatcatttgaatgtaataattcaacaacataattca 79  Q
    |||||| ||||||||  ||||||||||||||||||||||||||    
T  16244478 cattcaccatcatttacatgtaataattcaacaacataattca 16244520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 261
Target Start/End: Complemental strand, 5471624 - 5471560
Alignment:
Q  198 aatacaacacattatgataaacatcatattcaacacctaa-aaatcattcacatatcttcattta 261  Q
    |||||||||| |||||||||||||||||| ||| || ||| || ||||||||| | |||||||||    
T  5471624 aatacaacaccttatgataaacatcatatccaaaacttaacaattcattcacacaccttcattta 5471560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 267
Target Start/End: Complemental strand, 49998556 - 49998472
Alignment:
Q  184 caagtaaatgaggaaa-tacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcata 267  Q
    |||||||| ||||||| |||||||| ||||| |||| |||||||||||  ||| | ||| | ||||||||||||||  |||||||    
T  49998556 caagtaaaggaggaaaatacaacaccttatgttaaatatcatattcaaggcctcacaattactcacatatcttcatccaatcata 49998472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 94 - 311
Target Start/End: Complemental strand, 5371913 - 5371695
Alignment:
Q  94 caccaacaatatcaccattaattaacatatatgcaagtaatcaacatcaacaatat--tattaccaacaattccatataatttttcacgatccaagtaaa 191  Q
    ||||||||||||||| || ||| ||||||||||||  |||||||||||||| ||||  |||   |||||| |||||| | ||| |||| || || | |||    
T  5371913 caccaacaatatcacaatcaatcaacatatatgcat-taatcaacatcaactatatcatatagtcaacaactccatacagtttctcacaattcaggcaaa 5371815  T
Q  192 tgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaacaatccacaaaagatttgc 291  Q
     ||| ||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  5371814 ggagaaaatacaacacattatgataaacatcatattcaacacatagaaaacattcacatatcttcatataatcatatcaaactatccacaaaagatttgc 5371715  T
Q  292 caagtaattggtcttaaaga 311  Q
    |||||| ||  |||||||||    
T  5371714 caagtatttactcttaaaga 5371695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 156 - 311
Target Start/End: Complemental strand, 12134903 - 12134748
Alignment:
Q  156 caacaattccatataatttttcacgatccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatctt 255  Q
    |||||| |||||||| ||| |||| ||||||||||| ||| ||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||    
T  12134903 caacaactccatatactttctcacaatccaagtaaaagagaaaatacaacactttatgataaacatcatattcaaaacctaacaatcattcacatatctt 12134804  T
Q  256 catttaatcatatcaaacaatccacaaaagatttgccaagtaattggtcttaaaga 311  Q
    ||| |||||||| ||||| || |||||||||||||||||||| ||||| |||||||    
T  12134803 catataatcataacaaactatacacaaaagatttgccaagtatttggtgttaaaga 12134748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 164 - 311
Target Start/End: Complemental strand, 17376703 - 17376556
Alignment:
Q  164 ccatataatttttcacgatccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaat 263  Q
    ||||||||||| |||| || |||||||| ||| |||||||||||| |||||||||||||||||||||||| || ||| |||||||||||||||||  |||    
T  17376703 ccatataatttctcacaattcaagtaaaggagaaaatacaacacactatgataaacatcatattcaacacttagaaagcattcacatatcttcatacaat 17376604  T
Q  264 catatcaaacaatccacaaaagatttgccaagtaattggtcttaaaga 311  Q
    |||||||||| ||||||||||||||| ||||||| |||||||||||||    
T  17376603 catatcaaactatccacaaaagattttccaagtatttggtcttaaaga 17376556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 156 - 311
Target Start/End: Complemental strand, 17213122 - 17212967
Alignment:
Q  156 caacaattccatataatttttcacgatccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatctt 255  Q
    |||||| | |||| ||||| |||| || |||||||| ||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||| || ||    
T  17213122 caacaacttcatacaatttctcacaattcaagtaaaggagaaaatacaacacattatgataaacatcatattcaacacctagcaatcattcacacatttt 17213023  T
Q  256 catttaatcatatcaaacaatccacaaaagatttgccaagtaattggtcttaaaga 311  Q
    ||| |||||||||||||| |||||||||||||||| ||| || ||| |||||||||    
T  17213022 catataatcatatcaaactatccacaaaagatttgtcaaatatttgatcttaaaga 17212967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 171 - 311
Target Start/End: Complemental strand, 54364708 - 54364568
Alignment:
Q  171 atttttcacgatccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatca 270  Q
    |||| |||| ||||||||||| ||| ||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||| | |||||||||||    
T  54364708 atttctcacaatccaagtaaaggagaaaatacaacaccttatgataaatatcatattcaacacctaacaatcattcacatatcttcgtataatcatatca 54364609  T
Q  271 aacaatccacaaaagatttgccaagtaattggtcttaaaga 311  Q
    ||| ||| ||||||||||| ||||||| |||| | ||||||    
T  54364608 aactatctacaaaagattttccaagtatttgggcctaaaga 54364568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 181 - 289
Target Start/End: Original strand, 24237839 - 24237947
Alignment:
Q  181 atccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaacaatccac 280  Q
    ||||||||||| ||| |||||||| || |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| || | || |||    
T  24237839 atccaagtaaaggagaaaatacaaaaccttatgataaatatcatattcaacacctaaaaatcattaacatatcttcatttaatcatataaagctattcac 24237938  T
Q  281 aaaagattt 289  Q
     ||||||||    
T  24237939 gaaagattt 24237947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 156 - 268
Target Start/End: Original strand, 49070752 - 49070864
Alignment:
Q  156 caacaattccatataatttttcacgatccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatctt 255  Q
    |||||| |||||||| ||| |||| ||||||||||| |||  |||||||||| |||| ||||| |||||||||||||||||| ||||| |||||||||||    
T  49070752 caacaactccatatactttctcacaatccaagtaaaggagagaatacaacaccttatcataaatatcatattcaacacctaacaatcactcacatatctt 49070851  T
Q  256 catttaatcatat 268  Q
    |||||||||||||    
T  49070852 catttaatcatat 49070864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 171 - 268
Target Start/End: Original strand, 12733092 - 12733189
Alignment:
Q  171 atttttcacgatccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatat 268  Q
    |||| |||| || |||||||| ||| ||||||||||| |||||||||||||||| |||||||| ||| ||| |||||||||||||||||| |||||||    
T  12733092 atttctcacaatacaagtaaaggagaaaatacaacaccttatgataaacatcatgttcaacacgtaacaattattcacatatcttcatttgatcatat 12733189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 156 - 311
Target Start/End: Original strand, 19558347 - 19558502
Alignment:
Q  156 caacaattccatataatttttcacgatccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatctt 255  Q
    |||||| || ||| ||||| |||| || |||||||| ||| |||||||||||||||||||||||||||||| |||||| |  | | ||||||||| ||||    
T  19558347 caacaactcgatacaatttctcacaattcaagtaaaggagaaaatacaacacattatgataaacatcatatccaacacatgtagagcattcacatgtctt 19558446  T
Q  256 catttaatcatatcaaacaatccacaaaagatttgccaagtaattggtcttaaaga 311  Q
    ||| ||||||||| |  | || ||| ||||||||   ||||||||||| |||||||    
T  19558447 catataatcatataaggctattcacgaaagatttataaagtaattggttttaaaga 19558502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 155 - 268
Target Start/End: Complemental strand, 16226425 - 16226313
Alignment:
Q  155 ccaacaattccatataatttttcacgatccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatct 254  Q
    ||||||| |||||| ||||  |||| ||||||||||  ||| ||||||||||||||||||||||  |||||||||||||||| ||   ||||||| |||     
T  16226425 ccaacaactccatacaattcctcacaatccaagtaac-gagaaaatacaacacattatgataaatttcatattcaacacctagaagaaattcacacatca 16226327  T
Q  255 tcatttaatcatat 268  Q
    ||||||||||||||    
T  16226326 tcatttaatcatat 16226313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 182 - 268
Target Start/End: Complemental strand, 47469561 - 47469475
Alignment:
Q  182 tccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaat-cattcacatatcttcatttaatcatat 268  Q
    |||||||||| ||| |||| |||||| |||||||||| ||||||||  || ||||||||| |||||||||||||||||||||||||||    
T  47469561 tccaagtaaa-gagaaaatgcaacaccttatgataaatatcatatttcacgcctaaaaattcattcacatatcttcatttaatcatat 47469475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 182 - 268
Target Start/End: Complemental strand, 50221179 - 50221093
Alignment:
Q  182 tccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaat-cattcacatatcttcatttaatcatat 268  Q
    |||||||||| ||| |||| |||||| |||||||||| |||||||| ||||||||| ||| |||||||||||||||||||| ||||||    
T  50221179 tccaagtaaa-gagaaaatgcaacaccttatgataaatatcatattaaacacctaacaattcattcacatatcttcatttagtcatat 50221093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 267
Target Start/End: Complemental strand, 41917981 - 41917896
Alignment:
Q  182 tccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaa-aaatcattcacatatcttcatttaatcata 267  Q
    |||||||||| || |||||||||||| ||||||| |||||||||| |||||||||| || ||| ||||||| |||||||||||||||    
T  41917981 tccaagtaaa-gatgaaatacaacaccttatgatgaacatcatatccaacacctaataagtcactcacataacttcatttaatcata 41917896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 156 - 283
Target Start/End: Original strand, 9651248 - 9651376
Alignment:
Q  156 caacaattccatataatttttcacgatccaagtaaatgaggaaa-tacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatct 254  Q
    |||||| | |||||||||| |||| ||| ||  ||| ||| ||| |||| ||||| |||||||||||||| |||||||||||  ||||||||| | ||||    
T  9651248 caacaacttcatataatttctcacaatcaaaacaaaggagaaaagtacatcacatcatgataaacatcatgttcaacacctattaatcattcatacatct 9651347  T
Q  255 tcatttaatcatatcaaacaatccacaaa 283  Q
    ||||  ||||||||||||| || ||||||    
T  9651348 tcatacaatcatatcaaactattcacaaa 9651376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 182 - 267
Target Start/End: Complemental strand, 13593957 - 13593872
Alignment:
Q  182 tccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaa-aaatcattcacatatcttcatttaatcata 267  Q
    |||||||||| || |||||||||||| ||||||| |||||||||| ||||| |||| || ||| ||||||| |||||||||||||||    
T  13593957 tccaagtaaa-gatgaaatacaacaccttatgatgaacatcatatccaacatctaacaagtcactcacataacttcatttaatcata 13593872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 182 - 289
Target Start/End: Complemental strand, 10238671 - 10238565
Alignment:
Q  182 tccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaat-cattcacatatcttcatttaatcatatcaaacaatccac 280  Q
    |||||||||| ||| |||| |||||| |||||||||  |||||||||||||  ||||||| |||||||||||||||||||| |||||| ||   ||| ||    
T  10238671 tccaagtaaa-gagaaaatgcaacaccttatgataat-atcatattcaacaattaaaaattcattcacatatcttcatttagtcatataaagttatctac 10238574  T
Q  281 aaaagattt 289  Q
    |||||||||    
T  10238573 aaaagattt 10238565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 273
Target Start/End: Original strand, 38763734 - 38763824
Alignment:
Q  184 caagtaaatgaggaaa-tacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaac 273  Q
    |||||||| ||||||| |||||||| | |||||||| |||||||| || |||| | ||| | ||||||||||||||| |||| ||||||||    
T  38763734 caagtaaaggaggaaaatacaacacctaatgataaatatcatatttaagacctcacaattactcacatatcttcattcaatcgtatcaaac 38763824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 297
Target Start/End: Complemental strand, 19082306 - 19082193
Alignment:
Q  184 caagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaacaatccacaaa 283  Q
    |||||||| ||| ||||| | |||  || ||||||||||||||||||||||||  |||| |||| | ||||| || ||||||||| || | || ||||||    
T  19082306 caagtaaaggagaaaatatatcacgctaagataaacatcatattcaacacctatcaatccttcatacatcttaatataatcatataaagctattcacaaa 19082207  T
Q  284 agatttgccaagta 297  Q
    | |||||| |||||    
T  19082206 atatttgcaaagta 19082193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 27783509 - 27783546
Alignment:
Q  49 tttgaatgtaataattcaacaacataattcatcatcat 86  Q
    |||| |||||||||||||||||||||||||||||||||    
T  27783509 tttgcatgtaataattcaacaacataattcatcatcat 27783546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 182 - 268
Target Start/End: Complemental strand, 15014515 - 15014429
Alignment:
Q  182 tccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaat-cattcacatatcttcatttaatcatat 268  Q
    |||||||||| ||| ||||||||||  |||||||||| ||||||| |||||  ||| ||| |||||||| ||||||||||| ||||||    
T  15014515 tccaagtaaa-gagaaaatacaacaacttatgataaatatcatatccaacatataacaattcattcacacatcttcatttagtcatat 15014429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 27 - 86
Target Start/End: Original strand, 21962059 - 21962117
Alignment:
Q  27 tcaccatcaacattcaacatcatttgaatgtaataattcaacaacataattcatcatcat 86  Q
    |||||||||| || || ||||||| | ||||||||||||||||||| |||||||||||||    
T  21962059 tcaccatcaatat-caccatcattagcatgtaataattcaacaacacaattcatcatcat 21962117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 268
Target Start/End: Complemental strand, 18240984 - 18240891
Alignment:
Q  176 tcacgatccaagtaaatgaggaaa-tacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatat 268  Q
    |||| ||||||||||| ||||||| |||||||| || |||||||| |||  |||||||| ||  | | | ||||||||||||||| ||||||||    
T  18240984 tcaccatccaagtaaaagaggaaaatacaacaccttgtgataaacttcacgttcaacacttaccatttactcacatatcttcattcaatcatat 18240891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 176 - 311
Target Start/End: Complemental strand, 8361 - 8226
Alignment:
Q  176 tcacgatccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaacaa 275  Q
    |||| ||||||||||| ||| ||||||||||| |||||||||| |||||||||||||||||| |||||||||||||| ||||| |||||||||||||| |    
T  8361 tcacaatccaagtaaaggagaaaatacaacaccttatgataaatatcatattcaacacctaacaatcattcacatatattcatgtaatcatatcaaacta 8262  T
Q  276 tccacaaaagatttgccaagtaattggtcttaaaga 311  Q
    ||||||||||||||| ||||||||||||||||||||    
T  8261 tccacaaaagatttgtcaagtaattggtcttaaaga 8226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 96; Significance: 4e-47; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 94 - 289
Target Start/End: Original strand, 25756940 - 25757137
Alignment:
Q  94 caccaacaatatcaccattaattaacatatatgcaagtaatcaacatcaacaatattat-tac--caacaattccatataatttttcacgatccaagtaa 190  Q
    |||||||||||||||||| ||||||||||||||||  |||||||||||||| |||| || ||   |||||| |||||| ||||| |||| |  |||||||    
T  25756940 caccaacaatatcaccatcaattaacatatatgcat-taatcaacatcaactatatcatatagttcaacaactccatacaatttctcacaagtcaagtaa 25757038  T
Q  191 atgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaacaatccacaaaagattt 289  Q
    | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||   |||||||||| ||||    
T  25757039 aggagaaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatataatcatataaagatatccacaaaatattt 25757137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 94 - 289
Target Start/End: Original strand, 25294920 - 25295117
Alignment:
Q  94 caccaacaatatcaccattaattaacatatatgcaagtaatcaacatcaacaatattat-tac--caacaattccatataatttttcacgatccaagtaa 190  Q
    |||||||||||||||||| ||||||||||||||||  |||||||||||||| |||| || ||   |||||| |||||| ||||| |||| |  |||||||    
T  25294920 caccaacaatatcaccatcaattaacatatatgcat-taatcaacatcaactatatcatatagttcaacaactccatacaatttctcacaagtcaagtaa 25295018  T
Q  191 atgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaacaatccacaaaagattt 289  Q
    | ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||   |||||||||| ||||    
T  25295019 aggagaaaatacaacacattatgataaacatcatattcaacacttaaaaatcattcacatatcttcatataatcatataaagatatccacaaaatattt 25295117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 156 - 307
Target Start/End: Complemental strand, 3845297 - 3845146
Alignment:
Q  156 caacaattccatataatttttcacgatccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatctt 255  Q
    |||||| |||||| ||||| |||| ||||||||||| ||| ||||||| ||||||| ||||||||||||||||||  |||  |||||||| |||||||||    
T  3845297 caacaactccatacaatttctcacaatccaagtaaaggagaaaatacatcacattaggataaacatcatattcaaagccttgaaatcatttacatatctt 3845198  T
Q  256 catttaatcatatcaaacaatccacaaaagatttgccaagtaattggtctta 307  Q
     || |||||||||||||| ||||||||||||||||||||||| |||||||||    
T  3845197 tatataatcatatcaaactatccacaaaagatttgccaagtatttggtctta 3845146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 156 - 309
Target Start/End: Complemental strand, 19332768 - 19332614
Alignment:
Q  156 caacaattccatataatttttcacgatccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatctt 255  Q
    |||||| |||||||| ||  |||| |||||||||||  || ||||||  ||||||||||||||||||||||||| |||||| ||||||| ||||||||||    
T  19332768 caacaactccatatacttcctcacaatccaagtaaagaagaaaatacttcacattatgataaacatcatattcatcacctagaaatcatccacatatctt 19332669  T
Q  256 catttaatcatatcaaacaatccac-aaaagatttgccaagtaattggtcttaaa 309  Q
    ||| |||||||||||||| |||||| ||||||||||| ||| |||||||||||||    
T  19332668 catataatcatatcaaactatccacaaaaagatttgctaagcaattggtcttaaa 19332614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 184 - 306
Target Start/End: Complemental strand, 20177107 - 20176985
Alignment:
Q  184 caagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaacaatccacaaa 283  Q
    |||||||| ||| ||||||||||| |||| |||||||||| ||||||||| ||  |||||||||||||||||||| |||||||||||||| |||||||||    
T  20177107 caagtaaaggagaaaatacaacaccttataataaacatcacattcaacacatagtaatcattcacatatcttcatataatcatatcaaactatccacaaa 20177008  T
Q  284 agatttgccaagtaattggtctt 306  Q
    |||||| ||||||| ||||||||    
T  20177007 agattttccaagtatttggtctt 20176985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 184 - 306
Target Start/End: Complemental strand, 20221834 - 20221712
Alignment:
Q  184 caagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaacaatccacaaa 283  Q
    |||||||| ||| ||||||||||| |||| |||||||||| ||||||||| ||  |||||||||||||||||||| |||||||||||||| |||||||||    
T  20221834 caagtaaaggagaaaatacaacaccttataataaacatcacattcaacacatagtaatcattcacatatcttcatataatcatatcaaactatccacaaa 20221735  T
Q  284 agatttgccaagtaattggtctt 306  Q
    |||||| ||||||| ||||||||    
T  20221734 agattttccaagtatttggtctt 20221712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 199 - 311
Target Start/End: Original strand, 11543571 - 11543683
Alignment:
Q  199 atacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaacaatccacaaaagatttgccaagtaa 298  Q
    ||||||||  ||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||| ||||| |||| ||||||||||| ||||||     
T  11543571 atacaacaatttatgataaacatcatattcaacacctagcaatcattcacataccttcatttaatcataacaaactatcctcaaaagatttgacaagtat 11543670  T
Q  299 ttggtcttaaaga 311  Q
    |||||||||||||    
T  11543671 ttggtcttaaaga 11543683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 98 - 289
Target Start/End: Complemental strand, 45560429 - 45560236
Alignment:
Q  98 aacaatatcaccattaattaacatatatgcaagtaatcaacatcaacaatattat-tac--caacaattccatataatttttcacgatccaagtaaatga 194  Q
    ||||||||||| || ||  ||||||||||||  |||||||||||||| |||| || ||   |||||| |||||| || || |||| ||||||||||| ||    
T  45560429 aacaatatcacaatcaaacaacatatatgcat-taatcaacatcaactatatcatatagttcaacaactccatacaacttctcacaatccaagtaaagga 45560331  T
Q  195 ggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaacaatccacaaaagattt 289  Q
    | ||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||| |    |||||||||||||||    
T  45560330 gaaaatacaacactttatgataaacatcatattcaacacctaacaatcgttcacatatcttcatataatcatataatgatatccacaaaagattt 45560236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 210 - 308
Target Start/End: Complemental strand, 18119139 - 18119041
Alignment:
Q  210 tatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaacaatccacaaaagatttgccaagtaattggtcttaa 308  Q
    |||||||||||||||||||||||||||  || ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||| ||||||    
T  18119139 tatgataaacatcatattcaacacctagcaaacattcacatatcttcatataatcatatcaaactatccacaaaagatttgccaagtatttgatcttaa 18119041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 182 - 288
Target Start/End: Original strand, 17500969 - 17501074
Alignment:
Q  182 tccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaacaatccaca 281  Q
    |||||||||| || |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||| || | |||||||    
T  17500969 tccaagtaaa-gatgaaatacaacaccttatgataaacatcatattcaacacctaacaatcattcacataatttcatttaatcatataaagctatccaca 17501067  T
Q  282 aaagatt 288  Q
    |||||||    
T  17501068 aaagatt 17501074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 94 - 309
Target Start/End: Original strand, 22312620 - 22312836
Alignment:
Q  94 caccaacaatatcaccattaattaacatatatgcaagtaatcaacatcaacaatattat-tac--caacaattccatataatttttcacgatccaagtaa 190  Q
    ||||||||||||||| || ||  ||||||||||||  |||||||||||||| |||| || ||   |||||| ||||||  |||| |||| || ||||| |    
T  22312620 caccaacaatatcacaatcaaccaacatatatgcat-taatcaacatcaactatatcatatagttcaacaactccatactatttctcacaattcaagtga 22312718  T
Q  191 atgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaacaatccacaaaagatttg 290  Q
      ||| | ||||||||  ||||||||||||||||||||||||||||  || |||||||||| |||||||| |||||| ||||| || |||||||||||||    
T  22312719 g-gagaagatacaacaatttatgataaacatcatattcaacacctagcaaccattcacataccttcatttcatcataacaaactattcacaaaagatttg 22312817  T
Q  291 ccaagtaattggtcttaaa 309  Q
    ||||||| || ||||||||    
T  22312818 ccaagtatttcgtcttaaa 22312836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 182 - 289
Target Start/End: Complemental strand, 22498514 - 22498407
Alignment:
Q  182 tccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaacaatccaca 281  Q
    |||||||| | ||| ||||||||||| || |||||||||||||||||||||||||  |||||||||||||||||||||||||||||| || | || |||     
T  22498514 tccaagtataggagaaaatacaacaccttgtgataaacatcatattcaacacctatcaatcattcacatatcttcatttaatcatataaagctattcacg 22498415  T
Q  282 aaagattt 289  Q
    ||||||||    
T  22498414 aaagattt 22498407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 182 - 289
Target Start/End: Original strand, 22886807 - 22886914
Alignment:
Q  182 tccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaacaatccaca 281  Q
    |||| ||||| ||| | ||||||||| ||||||||||||||||||||||||| ||| ||||||||||||| ||||||||| |||||| || | || ||||    
T  22886807 tccatgtaaaggagaagatacaacaccttatgataaacatcatattcaacacttaacaatcattcacatagcttcatttagtcatataaagctattcaca 22886906  T
Q  282 aaagattt 289  Q
    ||||||||    
T  22886907 aaagattt 22886914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 197 - 268
Target Start/End: Complemental strand, 18042743 - 18042671
Alignment:
Q  197 aaatacaacacattatgataaacatcatattcaacacctaa-aaatcattcacatatcttcatttaatcatat 268  Q
    ||||||||||| |||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||    
T  18042743 aaatacaacaccttatgataaatatcatattcaacacctaacaattcattcacatatcttcatttaatcatat 18042671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 131 - 289
Target Start/End: Original strand, 24238581 - 24238742
Alignment:
Q  131 taatcaacatcaacaatat--tattac-caacaattccatataatttttcacgatccaagtaaatgaggaaatacaacacattatgataaacatcatatt 227  Q
    |||||||||||||| ||||  ||| || |||||| | |||||| ||| |||  |||||||||||  || ||||||||||| ||| ||||||| || ||||    
T  24238581 taatcaacatcaactatataatataactcaacaacttcatatactttctcataatccaagtaaagaagtaaatacaacacgttacgataaacctcgtatt 24238680  T
Q  228 caacacctaaaaatcattcacatatcttcatttaatcatatcaaacaatccacaaaagattt 289  Q
    ||||||| || |||||||||| ||||||||||||||||||| || | || ||| ||||||||    
T  24238681 caacaccgaagaatcattcacttatcttcatttaatcatataaatctattcacgaaagattt 24238742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 184 - 288
Target Start/End: Original strand, 7469206 - 7469311
Alignment:
Q  184 caagtaaatgaggaaa-tacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaacaatccacaa 282  Q
    |||||||| ||||||| |||||||| |||||||||||||||||||||| ||||   ||| | ||||||||||||||| |||||||| || | || |||||    
T  7469206 caagtaaaggaggaaaatacaacaccttatgataaacatcatattcaagacctcgcaattactcacatatcttcattcaatcatataaagctattcacaa 7469305  T
Q  283 aagatt 288  Q
    ||||||    
T  7469306 aagatt 7469311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 184 - 289
Target Start/End: Original strand, 24906839 - 24906944
Alignment:
Q  184 caagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaacaatccacaaa 283  Q
    |||||||| |||| |||||||| || ||||||||||||||| |||| ||| || | ||||||||||||||||||| ||||||||| |  | || ||||||    
T  24906839 caagtaaaggagggaatacaacgcactatgataaacatcatgttcatcacatagagatcattcacatatcttcatataatcatataaggctattcacaaa 24906938  T
Q  284 agattt 289  Q
    ||||||    
T  24906939 agattt 24906944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 182 - 266
Target Start/End: Original strand, 33171211 - 33171295
Alignment:
Q  182 tccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaa-aaatcattcacatatcttcatttaatcat 266  Q
    |||||||||| ||| |||| |||||| |||||||||| |||||||||||||||||| || ||||||||||||||||||||| ||||    
T  33171211 tccaagtaaa-gagaaaatgcaacaccttatgataaatatcatattcaacacctaacaattcattcacatatcttcatttagtcat 33171295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 185 - 288
Target Start/End: Complemental strand, 38636902 - 38636798
Alignment:
Q  185 aagtaaatgaggaaa-tacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaacaatccacaaa 283  Q
    ||||||| ||||||| |||||||| |||||||||| ||||||||||| |||| | ||| | ||||||||||||||| |||||||| |||| |  ||||||    
T  38636902 aagtaaaggaggaaaatacaacaccttatgataaatatcatattcaatacctcacaattactcacatatcttcattcaatcatataaaactaatcacaaa 38636803  T
Q  284 agatt 288  Q
    |||||    
T  38636802 agatt 38636798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 265
Target Start/End: Original strand, 16001044 - 16001127
Alignment:
Q  182 tccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatca 265  Q
    ||||||| || ||| |||||||||||  |||||||||||||||||||||  ||||| ||  ||||||||||||||| |||||||    
T  16001044 tccaagtgaaggagaaaatacaacaccctatgataaacatcatattcaatgcctaacaactattcacatatcttcacttaatca 16001127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 259
Target Start/End: Original strand, 25609175 - 25609254
Alignment:
Q  181 atccaagtaaatgaggaaa-tacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatt 259  Q
    ||||||||||| ||||||| |||||| | ||||||||||||||||||||||||| ||| ||| |  ||||||||||||||    
T  25609175 atccaagtaaaggaggaaaatacaacgccttatgataaacatcatattcaacacttaacaattacccacatatcttcatt 25609254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 86
Target Start/End: Original strand, 25281295 - 25281342
Alignment:
Q  39 ttcaacatcatttgaatgtaataattcaacaacataattcatcatcat 86  Q
    |||| ||||||||| ||||||||| |||||||||||||||||||||||    
T  25281295 ttcaccatcatttgcatgtaataactcaacaacataattcatcatcat 25281342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 24383193 - 24383231
Alignment:
Q  44 catcatttgaatgtaataattcaacaacataattcatca 82  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  24383193 catcatttgcaagtaataattcaacaacataattcatca 24383231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 232
Target Start/End: Complemental strand, 37654881 - 37654832
Alignment:
Q  182 tccaagtaaatgaggaaatacaacacattatgataaacatcatattcaaca 232  Q
    |||||||||| ||| ||||||||||| |||||||||| |||||||||||||    
T  37654881 tccaagtaaa-gagaaaatacaacaccttatgataaatatcatattcaaca 37654832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 4e-47; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 156 - 311
Target Start/End: Complemental strand, 39292935 - 39292780
Alignment:
Q  156 caacaattccatataatttttcacgatccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatctt 255  Q
    |||||| |||||| ||||| |||| || || ||||| |||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  39292935 caacaactccatacaatttctcacaatacacgtaaaggagagaatacaacacattatgataaacatcatattcaacacctagaaatcattcacatatctt 39292836  T
Q  256 catttaatcatatcaaacaatccacaaaagatttgccaagtaattggtcttaaaga 311  Q
    ||| |||||||||||||| |||||||||  |||||||||||| |||||||||||||    
T  39292835 catataatcatatcaaactatccacaaacaatttgccaagtatttggtcttaaaga 39292780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 94 - 308
Target Start/End: Complemental strand, 21676173 - 21675957
Alignment:
Q  94 caccaacaatatcaccattaattaacatatatgcaagtaatcaacatcaacaatattat-tac--caacaattccatataatttttcacgatccaagtaa 190  Q
    |||||||||||||  ||| ||||||||||||||||  || ||||||||||| |||| || ||   |||||| |||||| ||||| |||| || |||||||    
T  21676173 caccaacaatatcctcatcaattaacatatatgcat-tattcaacatcaactatatcatatagttcaacaactccatacaatttctcacaattcaagtaa 21676075  T
Q  191 atgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaacaatccacaaaagatttg 290  Q
    | ||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||| || |||||  |||| ||||||||||||||||    
T  21676074 aggagaaaatacaacacattatgataaacatcatattcaacacctataaagcattcacatatattcatatagtcatagaaaactatccacaaaagatttg 21675975  T
Q  291 ccaagtaattggtcttaa 308  Q
    ||||||| ||||||||||    
T  21675974 ccaagtatttggtcttaa 21675957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 156 - 308
Target Start/End: Complemental strand, 15979256 - 15979104
Alignment:
Q  156 caacaattccatataatttttcacgatccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatctt 255  Q
    |||||| | |||| ||||| |||| |||||||||||  || ||||||| ||||||| ||||||||| ||||||||||||||||||||||||| |||||||    
T  15979256 caacaacttcatacaatttctcacaatccaagtaaagtagaaaatacatcacattaggataaacataatattcaacacctaaaaatcattcatatatctt 15979157  T
Q  256 catttaatcatatcaaacaatccacaaaagatttgccaagtaattggtcttaa 308  Q
    ||| |||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  15979156 catataatcatatcaaactatccacaaaagatttgccaagtatttggtcttaa 15979104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 94 - 308
Target Start/End: Original strand, 28719406 - 28719622
Alignment:
Q  94 caccaacaatatcaccattaattaacatatatgcaagtaatcaacatcaacaatattat-tac--caacaattccatataatttttcacgatccaagtaa 190  Q
    ||||||||||||||| || ||| ||||||||||||  ||||||||||||||  ||| || ||   |||||| |||||| ||||| |||  || |||||||    
T  28719406 caccaacaatatcacaatcaatcaacatatatgcat-taatcaacatcaactctatcatatagttcaacaactccatacaatttctcaaaattcaagtaa 28719504  T
Q  191 atgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaacaatccacaaaagatttg 290  Q
    | ||| ||||||||||||||||||||||||||||||||||||| |  ||| ||||||||||||||||| |||||||||||||  |||||||||||||||     
T  28719505 aagagaaaatacaacacattatgataaacatcatattcaacacatgtaaagcattcacatatcttcatataatcatatcaaattatccacaaaagatttt 28719604  T
Q  291 ccaagtaattggtcttaa 308  Q
    ||||||| ||||||||||    
T  28719605 ccaagtatttggtcttaa 28719622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 163 - 311
Target Start/End: Complemental strand, 3193332 - 3193184
Alignment:
Q  163 tccatataatttttcacgatccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaa 262  Q
    |||||| || || |||| || |||||||| ||| |||||| ||| ||||||||||||||||||||||| |||||  |||||||||||||||||||| |||    
T  3193332 tccatacaagttctcacaattcaagtaaaggagaaaatacgacaaattatgataaacatcatattcaatacctagcaatcattcacatatcttcatataa 3193233  T
Q  263 tcatatcaaacaatccacaaaagatttgccaagtaattggtcttaaaga 311  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  3193232 tcatatcaaactatccacaaaagatttgccaagtatttggtcttaaaga 3193184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 94 - 311
Target Start/End: Complemental strand, 8564841 - 8564622
Alignment:
Q  94 caccaacaatatcaccattaattaacatatatgcaagtaatcaacatcaacaatattat-tac--caacaattccatataatttttcacgatccaagtaa 190  Q
    |||| |||||||||| || ||||||||||||||||  |||||||||||||| |||| || ||   |||||| ||||||  |||| |||| || |||||||    
T  8564841 caccgacaatatcacaatcaattaacatatatgcat-taatcaacatcaactatatcatatagttcaacaactccatacgatttctcacaattcaagtaa 8564743  T
Q  191 atgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaacaatccacaaaagatttg 290  Q
    | ||| | ||||||||||  ||||||||||||||||||| ||| || ||| ||||||||||||||||| |||||||| ||||| ||||||| |||||||     
T  8564742 aggagaacatacaacacacaatgataaacatcatattcagcacttagaaagcattcacatatcttcatataatcatagcaaactatccacataagatttt 8564643  T
Q  291 ccaagtaattggtcttaaaga 311  Q
    ||||||| |||| ||||||||    
T  8564642 ccaagtatttggacttaaaga 8564622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 184 - 306
Target Start/End: Complemental strand, 44306346 - 44306224
Alignment:
Q  184 caagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaacaatccacaaa 283  Q
    |||||||| ||| ||||||||||| |||| |||||||||| ||||||||| ||  |||||||||||||||||||| |||||||||||||| |||||||||    
T  44306346 caagtaaaggagaaaatacaacaccttataataaacatcacattcaacacatagtaatcattcacatatcttcatataatcatatcaaactatccacaaa 44306247  T
Q  284 agatttgccaagtaattggtctt 306  Q
    |||||| ||||||| ||||||||    
T  44306246 agattttccaagtatttggtctt 44306224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 94 - 286
Target Start/End: Original strand, 16382499 - 16382693
Alignment:
Q  94 caccaacaatatcaccattaattaacatatatgcaagtaatcaacatcaacaatattat-tac--caacaattccatataatttttcacgatccaagtaa 190  Q
    ||||||||||||||| ||  || |||||||||| || || ||||||||||| |||| || ||   |||||| |||||||| ||| |||  ||||||||||    
T  16382499 caccaacaatatcacaatatatcaacatatatgtaa-tattcaacatcaactatatcatatagttcaacaactccatatactttctcataatccaagtaa 16382597  T
Q  191 atgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaacaatccacaaaaga 286  Q
    | ||| ||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||| | ||| |||| |||||||    
T  16382598 aggagaaaatacaacaccttataataaacatcatattcaacacctaacaatcattcacatatcttcatataatcataacgaactatccgcaaaaga 16382693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 182 - 311
Target Start/End: Complemental strand, 18080847 - 18080719
Alignment:
Q  182 tccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaacaatccaca 281  Q
    |||||||||| ||| |||||||| || ||||||| |||||||||| |||  ||||| |||||||||||||||||||  ||||||||| || | |||||||    
T  18080847 tccaagtaaa-gagaaaatacaatacgttatgatgaacatcatatccaatgcctaacaatcattcacatatcttcacataatcatataaagctatccaca 18080749  T
Q  282 aaagatttgccaagtaattggtcttaaaga 311  Q
    |||||||| |||||||||||||||||||||    
T  18080748 aaagattttccaagtaattggtcttaaaga 18080719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 210 - 306
Target Start/End: Complemental strand, 17986074 - 17985978
Alignment:
Q  210 tatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaacaatccacaaaagatttgccaagtaattggtctt 306  Q
    |||||||||||||||||||||||| ||  |||||||||||||||||||| |||| ||||||||| ||||||||||||||||||| ||| ||||||||    
T  17986074 tatgataaacatcatattcaacacttagcaatcattcacatatcttcatataattatatcaaactatccacaaaagatttgccatgtatttggtctt 17985978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 211 - 311
Target Start/End: Complemental strand, 16369537 - 16369437
Alignment:
Q  211 atgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaacaatccacaaaagatttgccaagtaattggtcttaaag 310  Q
    |||||| |||||||||||||| |||| |||||||||| | |||| ||| || ||||||||||| |||||||||||||||| |||||| ||||||||||||    
T  16369537 atgatacacatcatattcaactcctataaatcattcatacatctacatatagtcatatcaaactatccacaaaagatttgtcaagtatttggtcttaaag 16369438  T
Q  311 a 311  Q
    |    
T  16369437 a 16369437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 156 - 265
Target Start/End: Original strand, 13617748 - 13617857
Alignment:
Q  156 caacaattccatataatttttcacgatccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatctt 255  Q
    |||||| |||||| | ||| ||||  |||||||||| ||| ||||||||||| |||| |||||||||||||||| ||||||| ||||||||| |||||||    
T  13617748 caacaactccatacactttctcacattccaagtaaaggagaaaatacaacaccttataataaacatcatattcagcacctaacaatcattcaaatatctt 13617847  T
Q  256 catttaatca 265  Q
     |||||||||    
T  13617848 aatttaatca 13617857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 97 - 268
Target Start/End: Original strand, 4483682 - 4483855
Alignment:
Q  97 caacaatatcaccattaattaacatatatgcaagtaatcaacatcaacaatattat-tac--caacaattccatataatttttcacgatccaagtaaatg 193  Q
    |||||||||||| || ||| ||||||||||||  |||||||||||||| |||| || ||   |||||| |||||| ||||| |||| || ||| |||| |    
T  4483682 caacaatatcacaatcaatcaacatatatgcat-taatcaacatcaactatatcatatagttcaacaactccatacaatttctcacaattcaaataaagg 4483780  T
Q  194 aggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatat 268  Q
     | |||||||||| |||||||||||||||||||||||||| |  |||  ||| ||||||||||||||| ||||||    
T  4483781 ggaaaatacaacatattatgataaacatcatattcaacacatgtaaagaatttacatatcttcatttagtcatat 4483855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 182 - 265
Target Start/End: Complemental strand, 14276185 - 14276103
Alignment:
Q  182 tccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatca 265  Q
    |||||||||| || |||||||||||| ||||||||||||||||||||||||||||  ||||||| ||||| |||||||||||||    
T  14276185 tccaagtaaa-gatgaaatacaacaccttatgataaacatcatattcaacacctatcaatcattaacataacttcatttaatca 14276103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 156 - 311
Target Start/End: Complemental strand, 21539390 - 21539234
Alignment:
Q  156 caacaattccatataatttttcacga-tccaagtaaatgaggaaatacaacacattatgataaac-atcatattcaacacctaaaaatcattcacatatc 253  Q
    |||||| |||||| ||||| |||| | |||||||||  ||| ||||||| ||||| ||||||||  ||||||||||| | |||  |||||||||||||||    
T  21539390 caacaactccatacaatttctcacaaatccaagtaag-gagaaaatacatcacatcatgataaaatatcatattcaatatctagcaatcattcacatatc 21539292  T
Q  254 ttcatttaatcatatcaaacaatccacaaaagatttgccaagtaattggtcttaaaga 311  Q
    ||||| ||| |||| | ||| |||||| |||||||||||||||| | |||||||||||    
T  21539291 ttcatataaacataaccaactatccaccaaagatttgccaagtattaggtcttaaaga 21539234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 182 - 268
Target Start/End: Complemental strand, 9322279 - 9322193
Alignment:
Q  182 tccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaa-aaatcattcacatatcttcatttaatcatat 268  Q
    |||||||||| ||| |||| |||||| |||||||||| |||||||||||||||||| || ||||||||||||||||||||| ||||||    
T  9322279 tccaagtaaa-gagaaaatgcaacaccttatgataaatatcatattcaacacctaacaattcattcacatatcttcatttagtcatat 9322193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 245 - 311
Target Start/End: Original strand, 46473026 - 46473092
Alignment:
Q  245 tcacatatcttcatttaatcatatcaaacaatccacaaaagatttgccaagtaattggtcttaaaga 311  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||| ||||| ||| |||||||||    
T  46473026 tcacatatcttcatataatcatatcaaactatccacaaaagatttgctaagtatttgatcttaaaga 46473092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 184 - 288
Target Start/End: Original strand, 14939731 - 14939836
Alignment:
Q  184 caagtaaatgaggaaa-tacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaacaatccacaa 282  Q
    |||||||| ||||||| |||||||| |||||||||| ||||||||||| |||| | ||| | ||||||||||||||| |||||||| |||| |  |||||    
T  14939731 caagtaaaggaggaaaatacaacaccttatgataaatatcatattcaagacctcacaattactcacatatcttcattcaatcatataaaactaatcacaa 14939830  T
Q  283 aagatt 288  Q
    ||||||    
T  14939831 aagatt 14939836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 184 - 288
Target Start/End: Original strand, 15367324 - 15367429
Alignment:
Q  184 caagtaaatgaggaaa-tacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaacaatccacaa 282  Q
    |||||||| ||||||| |||||||| |||||||||| ||||||||||| |||| | ||| | ||||||||||||||| |||||||| |||| |  |||||    
T  15367324 caagtaaaggaggaaaatacaacaccttatgataaatatcatattcaagacctcacaattactcacatatcttcattcaatcatataaaactaatcacaa 15367423  T
Q  283 aagatt 288  Q
    ||||||    
T  15367424 aagatt 15367429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 170 - 254
Target Start/End: Original strand, 19066519 - 19066603
Alignment:
Q  170 aatttttcacgatccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatct 254  Q
    ||||| |||| || |||||||| ||  ||||||||||||||||||||||| |||| |||| ||||||| ||||||||||||||||    
T  19066519 aatttctcacaattcaagtaaaagaaaaaatacaacacattatgataaacctcatgttcagcacctaacaatcattcacatatct 19066603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 217 - 289
Target Start/End: Complemental strand, 36301481 - 36301409
Alignment:
Q  217 aacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaacaatccacaaaagattt 289  Q
    ||||||||||||||||||||  ||||||||| |||||| ||| |||||||||||||  |||||||||||||||    
T  36301481 aacatcatattcaacacctagcaatcattcaaatatctccatataatcatatcaaattatccacaaaagattt 36301409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 210 - 273
Target Start/End: Original strand, 12183010 - 12183073
Alignment:
Q  210 tatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaac 273  Q
    ||||||||||||||||||||||| ||| |||||||||||| | |||||| ||||||||||||||    
T  12183010 tatgataaacatcatattcaacatctataaatcattcacacaacttcatataatcatatcaaac 12183073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 199 - 289
Target Start/End: Original strand, 13350982 - 13351072
Alignment:
Q  199 atacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaacaatccacaaaagattt 289  Q
    ||||| ||| ||||| |||||||||||||||| |||||| |||||||||||||| ||| ||||||||||| || | || |||||| |||||    
T  13350982 atacatcaccttatggtaaacatcatattcaatacctaagaatcattcacatatattcttttaatcatataaagctattcacaaatgattt 13351072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 217 - 289
Target Start/End: Original strand, 38294814 - 38294886
Alignment:
Q  217 aacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaacaatccacaaaagattt 289  Q
    ||||||||||||||||||||  ||||||||| |||||| ||| ||||||||||||   |||||||||||||||    
T  38294814 aacatcatattcaacacctagcaatcattcaaatatctccatataatcatatcaatttatccacaaaagattt 38294886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 182 - 267
Target Start/End: Original strand, 9643289 - 9643374
Alignment:
Q  182 tccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaa-aaatcattcacatatcttcatttaatcata 267  Q
    |||||||||| || |||||||||||| ||||||| |||||||||| ||||| |||| || ||| ||||||| |||||||||||||||    
T  9643289 tccaagtaaa-gatgaaatacaacaccttatgatgaacatcatatccaacatctaacaagtcactcacataacttcatttaatcata 9643374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 197 - 268
Target Start/End: Complemental strand, 20584104 - 20584032
Alignment:
Q  197 aaatacaacacattatgataaacatcatattcaacacctaa-aaatcattcacatatcttcatttaatcatat 268  Q
    |||||||||||  ||||||||||||||||| |||||| ||| || |||||||| |||||||||||| ||||||    
T  20584104 aaatacaacaccctatgataaacatcatatccaacacttaacaattcattcacgtatcttcatttagtcatat 20584032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 246
Target Start/End: Original strand, 13463343 - 13463378
Alignment:
Q  211 atgataaacatcatattcaacacctaaaaatcattc 246  Q
    ||||||||||||||||||||||||||||||||||||    
T  13463343 atgataaacatcatattcaacacctaaaaatcattc 13463378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 220 - 289
Target Start/End: Complemental strand, 33556888 - 33556819
Alignment:
Q  220 atcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaacaatccacaaaagattt 289  Q
    ||||||| |||||||||  ||| ||||| |||||| ||| |||||||||||||  |||||||||||||||    
T  33556888 atcatatacaacacctagcaattattcaaatatctccatataatcatatcaaattatccacaaaagattt 33556819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 19382099 - 19382135
Alignment:
Q  10 aattagcatgtataaactcaccatcaacattcaacat 46  Q
    ||||||||||||||||||||||||||||| |||||||    
T  19382099 aattagcatgtataaactcaccatcaacaatcaacat 19382135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 268
Target Start/End: Original strand, 45148558 - 45148670
Alignment:
Q  156 caacaattccatataatttttcacgatccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatctt 255  Q
    |||||| |||||||| | | |||| | ||||||||||||| ||||||||  ||||| ||||||| ||  || ||| || ||  | |||||||||||||||    
T  45148558 caacaactccatatactatctcacaaaccaagtaaatgagaaaatacaatgcattaggataaacctcgcatacaaaacttagcactcattcacatatctt 45148657  T
Q  256 catttaatcatat 268  Q
    |||| ||||||||    
T  45148658 cattcaatcatat 45148670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 127
Target Start/End: Complemental strand, 16369693 - 16369660
Alignment:
Q  94 caccaacaatatcaccattaattaacatatatgc 127  Q
    |||||||||||||||||| |||||||||||||||    
T  16369693 caccaacaatatcaccatcaattaacatatatgc 16369660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0183 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: scaffold0183
Description:

Target: scaffold0183; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 94 - 311
Target Start/End: Original strand, 9762 - 9983
Alignment:
Q  94 caccaacaatatcaccattaattaacatatatgcaagtaatcaacatcaacaatattat-tac--caacaattccatataatttt-tcacgatccaagta 189  Q
    |||||||||||||||||| ||||| ||||||||||  |||||||||||||| |||| || ||   |||||| |||||| |||||| |||| || ||||||    
T  9762 caccaacaatatcaccatcaattatcatatatgcat-taatcaacatcaactatatcatatagttcaacaactccatacaattttctcacaattcaagta 9860  T
Q  190 aatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacata-tcttcatttaatcatatcaaacaatccacaaaagatt 288  Q
    || ||| |||||||||| |||||| |||||||||||||||||||||| |||  ||||||||| ||||||| |||||||||||||| ||| ||||||||||    
T  9861 aaagagaaaatacaacatattatggtaaacatcatattcaacacctagaaagaattcacataatcttcatataatcatatcaaactatcaacaaaagatt 9960  T
Q  289 tgccaagtaattggtcttaaaga 311  Q
     |||||||| |||||||||||||    
T  9961 agccaagtatttggtcttaaaga 9983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 94 - 308
Target Start/End: Original strand, 11532 - 11750
Alignment:
Q  94 caccaacaatatcaccattaattaacatatatgcaagtaatcaacat-caacaatat--tattac-caacaattccatataatttttcacgatccaagta 189  Q
    |||| ||||||||||||| | | ||||||||||||  |||||||||| |||| ||||  ||| || |||||| | |||| | ||| |||| |||||||||    
T  11532 caccgacaatatcaccatcagtcaacatatatgcat-taatcaacattcaactatataatataactcaacaacttcatacactttctcacaatccaagta 11630  T
Q  190 aatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaacaatcc-acaaaagatt 288  Q
    || ||| ||||| ||||| |||||||||||||||||||||||||| |||||| ||| |||||||||||| |||||||||||||| |||| | ||||||||    
T  11631 aaggagaaaataaaacaccttatgataaacatcatattcaacacccaaaaataattgacatatcttcatataatcatatcaaactatccaaaaaaagatt 11730  T
Q  289 tgccaagtaattggtcttaa 308  Q
    ||||||||||||||||||||    
T  11731 tgccaagtaattggtcttaa 11750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 6e-40; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 171 - 309
Target Start/End: Original strand, 8603651 - 8603790
Alignment:
Q  171 atttttcacgatccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatca 270  Q
    |||| |||| ||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||||    
T  8603651 atttctcacaatccaagtaaaggagaaaatacaacaccttatgataaacatcatattcaacacctaacaatcattcacatatcttcacataatcatatca 8603750  T
Q  271 aacaatccac-aaaagatttgccaagtaattggtcttaaa 309  Q
    ||| |||||| ||||||||||| ||| |||||| ||||||    
T  8603751 aactatccacaaaaagatttgcaaagcaattggccttaaa 8603790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 181 - 288
Target Start/End: Complemental strand, 38376938 - 38376831
Alignment:
Q  181 atccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaacaatccac 280  Q
    ||||||||||| ||| ||||| ||||| |||||||||||||||||  |||||||||| |||||||||||||||||||| |||| ||||||||| || |||    
T  38376938 atccaagtaaaggagaaaatataacaccttatgataaacatcatacacaacacctaacaatcattcacatatcttcatataatgatatcaaactattcac 38376839  T
Q  281 aaaagatt 288  Q
    ||||||||    
T  38376838 aaaagatt 38376831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 165 - 311
Target Start/End: Complemental strand, 37917620 - 37917474
Alignment:
Q  165 catataatttttcacgatccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatc 264  Q
    ||||| |||| |||| |||||| |||| ||| ||||||  |||| |||||||||||||||||||||||| ||  ||||||||| |||| | ||| |||||    
T  37917620 catatgatttctcaccatccaaataaaggagaaaatactccacactatgataaacatcatattcaacacatatcaatcattcaaatatgtccatataatc 37917521  T
Q  265 atatcaaacaatccacaaaagatttgccaagtaattggtcttaaaga 311  Q
    ||| | ||| ||||||||||||||||||||||| ||||||| |||||    
T  37917520 ataaccaactatccacaaaagatttgccaagtatttggtctgaaaga 37917474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 94 - 291
Target Start/End: Original strand, 11401526 - 11401725
Alignment:
Q  94 caccaacaatatcaccattaattaacatatatgcaagtaatcaacatcaacaatattat-tac--caacaattccatataatttttcacgatccaagtaa 190  Q
    |||||||||||||||||| ||||||||||||||||  ||||||||||||||  ||| || ||   |||||| | |||| ||||| |||| || |||||||    
T  11401526 caccaacaatatcaccatcaattaacatatatgcat-taatcaacatcaactttatcatatagttcaacaacttcatacaatttctcacaattcaagtaa 11401624  T
Q  191 atgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaacaatccacaaaagatttg 290  Q
    | ||| ||| ||| |||||||||||||||||||||||||||| |||  ||||||||| | | ||| || ||||||||| || | || |||||||||||||    
T  11401625 aggagaaaacacagcacattatgataaacatcatattcaacaactagcaatcattcatacaactttatgtaatcatataaagctattcacaaaagatttg 11401724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 197 - 289
Target Start/End: Complemental strand, 14181225 - 14181133
Alignment:
Q  197 aaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaacaatccacaaaagattt 289  Q
    ||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||| || | || ||||||||||||    
T  14181225 aaatacaacaccttatgataaacatcatattcaacacttaacaatcattcacatatcttcattcaatcatataaagctattcacaaaagattt 14181133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 165 - 309
Target Start/End: Complemental strand, 40040369 - 40040225
Alignment:
Q  165 catataatttttcacgatccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatc 264  Q
    ||||| |||| |||| |||||| |||| ||| ||||||  |||| ||||| |||||||||||||||||||||  ||||||||| |||||| ||| |||||    
T  40040369 catatgatttatcaccatccaaataaaggagaaaatacttcacactatgagaaacatcatattcaacacctatcaatcattcaaatatctccatataatc 40040270  T
Q  265 atatcaaacaatccacaaaagatttgccaagtaattggtcttaaa 309  Q
    ||| | ||| |||||||||| |||||||||||| ||| |||||||    
T  40040269 ataaccaactatccacaaaatatttgccaagtatttgatcttaaa 40040225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 156 - 308
Target Start/End: Complemental strand, 25105226 - 25105076
Alignment:
Q  156 caacaattccatataatttttcacgatccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatctt 255  Q
    |||||| |||||| |||||  ||| || |||||||| ||| |||||||||||  |  |||||||||| ||||| |||| || | | |||||||||||||     
T  25105226 caacaactccatacaatttcccacaattcaagtaaaggagaaaatacaacaccgt--gataaacatcgtattcgacacttagagagcattcacatatctc 25105129  T
Q  256 catttaatcatatcaaacaatccacaaaagatttgccaagtaattggtcttaa 308  Q
    ||| |||||||| ||||| ||||||||||||||||||||||| ||||||||||    
T  25105128 catataatcataacaaactatccacaaaagatttgccaagtatttggtcttaa 25105076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 157 - 311
Target Start/End: Complemental strand, 17759593 - 17759438
Alignment:
Q  157 aacaattccatataatttttcacgatccaagtaaatgaggaaatacaacacattatgataaaca-tcatattcaacacctaaaaatcattcacatatctt 255  Q
    ||||| |||||||| ||| |||| |||||| |||| ||| ||||||||||||  |||||||| | |  |||||||||| || | | |||||| ||||||     
T  17759593 aacaactccatatactttctcacaatccaattaaaagagaaaatacaacacaccatgataaaaaattgtattcaacacttagagagcattcagatatctc 17759494  T
Q  256 catttaatcatatcaaacaatccacaaaagatttgccaagtaattggtcttaaaga 311  Q
    ||| |||||||| ||||| || |||||||||||| ||||||| |||||||||||||    
T  17759493 catataatcataacaaactatgcacaaaagattttccaagtatttggtcttaaaga 17759438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 157 - 311
Target Start/End: Complemental strand, 19060913 - 19060758
Alignment:
Q  157 aacaattccatataatttttcacgatccaagtaaatgaggaaatacaacacattatgataaaca-tcatattcaacacctaaaaatcattcacatatctt 255  Q
    ||||| |||||||| ||| |||| |||||| |||| ||| ||||||||||||  |||||||| | |  |||||||||| || | | |||||| ||||||     
T  19060913 aacaactccatatactttctcacaatccaattaaaagagaaaatacaacacaccatgataaaaaattgtattcaacacttagagagcattcagatatctc 19060814  T
Q  256 catttaatcatatcaaacaatccacaaaagatttgccaagtaattggtcttaaaga 311  Q
    ||| |||||||| ||||| || |||||||||||| ||||||| |||||||||||||    
T  19060813 catataatcataacaaactatgcacaaaagattttccaagtatttggtcttaaaga 19060758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 94 - 233
Target Start/End: Complemental strand, 5229329 - 5229188
Alignment:
Q  94 caccaacaatatcaccattaattaacatatatgcaagtaatcaacatcaacaatat--tattac-caacaattccatataatttttcacgatccaagtaa 190  Q
    |||| |||||||||| || ||| ||||||||||||  ||||| |||||||| ||||  ||||   |||||| ||||||  |||| |||| || |||||||    
T  5229329 caccgacaatatcacaatcaatcaacatatatgcat-taatcgacatcaactatatcatattgttcaacaactccatacgatttctcacaattcaagtaa 5229231  T
Q  191 atgaggaaatacaacacattatgataaacatcatattcaacac 233  Q
    | ||| |||||||||||||||||||||||||||||||||||||    
T  5229230 aggagaaaatacaacacattatgataaacatcatattcaacac 5229188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 210 - 271
Target Start/End: Original strand, 14969895 - 14969956
Alignment:
Q  210 tatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaa 271  Q
    |||||||||||||||||||||||||||  ||||||||||| ||||||||  |||||||||||    
T  14969895 tatgataaacatcatattcaacacctatcaatcattcacacatcttcatacaatcatatcaa 14969956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 181 - 265
Target Start/End: Complemental strand, 17319818 - 17319733
Alignment:
Q  181 atccaagtaaatgaggaaa-tacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatca 265  Q
    ||||| ||||| ||||||| |||||||| || |||||||||||| ||||||||| ||| ||| | |||||||||||||||||||||    
T  17319818 atccacgtaaaggaggaaaatacaacaccttctgataaacatcaaattcaacacttaacaattactcacatatcttcatttaatca 17319733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 156 - 288
Target Start/End: Complemental strand, 43428802 - 43428670
Alignment:
Q  156 caacaattccatataatttttcacgatccaagtaaatgaggaaa-tacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatct 254  Q
    |||||| |||||| ||||| |||  || |||||||  ||||||| ||||| || |||||||||||||||||||||| |||  | | | | ||||||||||    
T  43428802 caacaactccatacaatttctcataatacaagtaatagaggaaaatacaataccttatgataaacatcatattcaagaccccacatt-actcacatatct 43428704  T
Q  255 tcatttaatcatatcaaacaatccacaaaagatt 288  Q
    ||||| |||||||| ||||||| |||||||||||    
T  43428703 tcattaaatcatataaaacaattcacaaaagatt 43428670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 217 - 289
Target Start/End: Complemental strand, 12918156 - 12918084
Alignment:
Q  217 aacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaacaatccacaaaagattt 289  Q
    ||||||||||||||||||||  ||||||||| |||||| ||| ||||||||||| |  |||||||||||||||    
T  12918156 aacatcatattcaacacctagcaatcattcaaatatctccatataatcatatcatattatccacaaaagattt 12918084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 170 - 273
Target Start/End: Complemental strand, 21167974 - 21167870
Alignment:
Q  170 aatttttcacgatccaagtaaatgaggaaa-tacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatat 268  Q
    ||||| |||| ||||||||||| ||||||| |||||||  || |||||||| ||| ||||||||||||  | | | ||||||||||||||| ||||||||    
T  21167974 aatttgtcaccatccaagtaaaagaggaaaatacaacatcttgtgataaacctcacattcaacacctaccatttactcacatatcttcattcaatcatat 21167875  T
Q  269 caaac 273  Q
     ||||    
T  21167874 aaaac 21167870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 217 - 289
Target Start/End: Complemental strand, 45804170 - 45804098
Alignment:
Q  217 aacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaacaatccacaaaagattt 289  Q
    ||||||||||||| ||||||  ||||||||| |||||| ||| ||||||||||||   |||||||||||||||    
T  45804170 aacatcatattcatcacctagcaatcattcaaatatctccatataatcatatcaatttatccacaaaagattt 45804098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 268
Target Start/End: Complemental strand, 33370098 - 33370012
Alignment:
Q  182 tccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaat-cattcacatatcttcatttaatcatat 268  Q
    |||||||||| ||| ||||||||||| |||||||||| ||||||| |||||  ||| ||| |||||||| ||||||||||| ||||||    
T  33370098 tccaagtaaa-gagaaaatacaacaccttatgataaatatcatatccaacatataacaatccattcacacatcttcatttagtcatat 33370012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 11833788 - 11833742
Alignment:
Q  37 cattcaacatcatttgaatgtaataattcaacaacataattcatcat 83  Q
    |||||| ||||||||||||||||||||| ||||| ||||||||||||    
T  11833788 cattcaccatcatttgaatgtaataatttaacaagataattcatcat 11833742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 27 - 86
Target Start/End: Original strand, 10933341 - 10933399
Alignment:
Q  27 tcaccatcaacattcaacatcatttgaatgtaataattcaacaacataattcatcatcat 86  Q
    |||||||||| || || ||||||||| ||||||||||||||||| ||||||||| |||||    
T  10933341 tcaccatcaatat-catcatcatttgcatgtaataattcaacaatataattcattatcat 10933399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 12794223 - 12794260
Alignment:
Q  49 tttgaatgtaataattcaacaacataattcatcatcat 86  Q
    |||| ||||||||||||||||||||| |||||||||||    
T  12794223 tttgcatgtaataattcaacaacatagttcatcatcat 12794260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 268
Target Start/End: Complemental strand, 11516730 - 11516638
Alignment:
Q  176 tcacgatccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatat 268  Q
    |||| |||||||||||  || ||||||| || |||| |||||| ||||| |||||||||||  ||| ||||| | ||||| || |||||||||    
T  11516730 tcacaatccaagtaaagaagaaaatacatcatattaagataaatatcattttcaacacctagcaattattcatacatctttatgtaatcatat 11516638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 86
Target Start/End: Original strand, 16280301 - 16280333
Alignment:
Q  54 atgtaataattcaacaacataattcatcatcat 86  Q
    ||||| |||||||||||||||||||||||||||    
T  16280301 atgtattaattcaacaacataattcatcatcat 16280333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0601 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0601
Description:

Target: scaffold0601; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 165 - 294
Target Start/End: Complemental strand, 2247 - 2119
Alignment:
Q  165 catataatttttcacgatccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatc 264  Q
    ||||| |||| |||| ||||||||||| ||| ||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||| || ||    
T  2247 catattatttctcacaatccaagtaaaggagaaaatacaacaccttatgataa-catcatattcaacacctaacaatcattcacatatcttcatatattc 2149  T
Q  265 atatcaaacaatccacaaaagatttgccaa 294  Q
    ||||||||| ||||||||||||||| ||||    
T  2148 atatcaaactatccacaaaagattttccaa 2119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 78; Significance: 2e-36; HSPs: 5)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 182 - 311
Target Start/End: Complemental strand, 35934 - 35806
Alignment:
Q  182 tccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaacaatccaca 281  Q
    |||||||||| ||| ||||||| |||| ||||||||||||||||||||||||| |  |||||||||||||||||||| |||||||||||||| |||||||    
T  35934 tccaagtaaa-gagaaaatacaccacactatgataaacatcatattcaacacccagcaatcattcacatatcttcatataatcatatcaaactatccaca 35836  T
Q  282 aaagatttgccaagtaattggtcttaaaga 311  Q
    |||||||| ||||||| ||||| |||||||    
T  35835 aaagattttccaagtatttggttttaaaga 35806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 94 - 254
Target Start/End: Complemental strand, 1479 - 1317
Alignment:
Q  94 caccaacaatatcaccattaattaacatatatgcaagtaatcaacatcaacaatattat-tac--caacaattccatataatttttcacgatccaagtaa 190  Q
    ||||||||||||||| || ||| ||||||||||||  |||||||| ||||| |||| || ||   |||||| |||||| ||||| |||| || |||||||    
T  1479 caccaacaatatcacaatcaatcaacatatatgcat-taatcaacgtcaactatatcatatagttcaacaactccatacaatttctcacaattcaagtaa 1381  T
Q  191 atgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatct 254  Q
    | ||| ||||||||||||||||||||||||||||||||||||| |  ||| |||||||||||||    
T  1380 aggagaaaatacaacacattatgataaacatcatattcaacacatgtaaagcattcacatatct 1317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 94 - 254
Target Start/End: Complemental strand, 5859 - 5697
Alignment:
Q  94 caccaacaatatcaccattaattaacatatatgcaagtaatcaacatcaacaatattat-tac--caacaattccatataatttttcacgatccaagtaa 190  Q
    ||||||||||||||| || ||| ||||||||||||  |||||||| ||||| |||| || ||   |||||| |||||| ||||| |||| || |||||||    
T  5859 caccaacaatatcacaatcaatcaacatatatgcat-taatcaacgtcaactatatcatatagttcaacaactccatacaatttctcacaattcaagtaa 5761  T
Q  191 atgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatct 254  Q
    | ||| ||||||||||||||||||||||||||||||||||||| |  ||| |||||||||||||    
T  5760 aggagaaaatacaacacattatgataaacatcatattcaacacatgtaaagcattcacatatct 5697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 249 - 311
Target Start/End: Complemental strand, 4435 - 4373
Alignment:
Q  249 atatcttcatttaatcatatcaaacaatccacaaaagatttgccaagtaattggtcttaaaga 311  Q
    |||||||||| |||||||||||||| ||| |||| |||||||||||||| || ||||||||||    
T  4435 atatcttcatataatcatatcaaactatctacaatagatttgccaagtatttcgtcttaaaga 4373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 52 - 4
Alignment:
Q  249 atatcttcatttaatcatatcaaacaatccacaaaagatttgccaagta 297  Q
    |||||||||| |||||||||||||| ||| |||| ||||||||||||||    
T  52 atatcttcatataatcatatcaaactatctacaatagatttgccaagta 4  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 197 - 311
Target Start/End: Complemental strand, 5234 - 5122
Alignment:
Q  197 aaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaacaatccacaaaagatttgccaagt 296  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||  | ||||| |||||||||||||||| |||||    
T  5234 aaatacaacacattatgataaacatcttattcaacacctagaaatcattcacatatcttcatataatc--aacaaactatccacaaaagatttgtcaagt 5137  T
Q  297 aattggtcttaaaga 311  Q
    | |||||||||||||    
T  5136 atttggtcttaaaga 5122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 197 - 306
Target Start/End: Complemental strand, 255508 - 255399
Alignment:
Q  197 aaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaacaatccacaaaagatttgccaagt 296  Q
    ||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||| ||||||||||||||||||| ||    
T  255508 aaatacaccacagtatgataaacatcatattcaacacctagaaatcattcacatatcttcatatattcatatcaaactatccacaaaagatttgccatgt 255409  T
Q  297 aattggtctt 306  Q
    | ||| ||||    
T  255408 atttgatctt 255399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 176 - 268
Target Start/End: Original strand, 4890 - 4982
Alignment:
Q  176 tcacgatccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatat 268  Q
    |||| ||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  4890 tcacaatccaagtaaaggagaaaatacaacaccttatgataaacatcatattcaacacctaacaatcattcacatatcttcatttaatcatat 4982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: scaffold0231
Description:

Target: scaffold0231; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 208 - 311
Target Start/End: Complemental strand, 14065 - 13962
Alignment:
Q  208 attatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaacaatccacaaaagatttgccaagtaattggtctta 307  Q
    |||||||||||||||||||||||||||||  |||||| ||||||||||||| |||||||| ||||| ||||||||||||||||| ||||| |||||||||    
T  14065 attatgataaacatcatattcaacacctagcaatcatccacatatcttcatataatcataacaaactatccacaaaagatttgctaagtatttggtctta 13966  T
Q  308 aaga 311  Q
    ||||    
T  13965 aaga 13962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1278 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold1278
Description:

Target: scaffold1278; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 184 - 311
Target Start/End: Original strand, 500 - 627
Alignment:
Q  184 caagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaacaatccacaaa 283  Q
    |||||||| ||| ||| |||||| |||||||||| |||||||||| ||| ||| ||| |||| | | |||||||| |||||||||||||| |||||||||    
T  500 caagtaaaggagaaaacacaacatattatgataagcatcatattccacaactagaaaccattaatacatcttcatataatcatatcaaactatccacaaa 599  T
Q  284 agatttgccaagtaattggtcttaaaga 311  Q
    |||||||||||||| |||||||||||||    
T  600 agatttgccaagtagttggtcttaaaga 627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 197 - 311
Target Start/End: Complemental strand, 21198 - 21084
Alignment:
Q  197 aaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaacaatccacaaaagatttgccaagt 296  Q
    ||||||| |||| ||||||||| ||||||||||||||||||||||||  |||||||||| || |||||||| | ||| ||||||||| ||||||||||||    
T  21198 aaatacatcacagtatgataaaaatcatattcaacacctaaaaatcaaccacatatctttatataatcataaccaactatccacaaatgatttgccaagt 21099  T
Q  297 aattggtcttaaaga 311  Q
    | |||||||||||||    
T  21098 atttggtcttaaaga 21084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1957 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold1957
Description:

Target: scaffold1957; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 209 - 311
Target Start/End: Complemental strand, 1013 - 911
Alignment:
Q  209 ttatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaacaatccacaaaagatttgccaagtaattggtcttaa 308  Q
    ||||||||||||| ||||||||||||||| ||||||   |||||||||||||||||||| ||||| || ||||||||||||||||| || ||||||||||    
T  1013 ttatgataaacattatattcaacacctaacaatcatctgcatatcttcatttaatcataacaaactattcacaaaagatttgccaaatatttggtcttaa 914  T
Q  309 aga 311  Q
    |||    
T  913 aga 911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 176 - 311
Target Start/End: Original strand, 76010 - 76143
Alignment:
Q  176 tcacgatccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaacaa 275  Q
    |||| |||||| |||| ||  ||||||  ||||||||||||||||||||||||| ||||||| ||||||  ||||  ||| || |||||| | ||||| |    
T  76010 tcacaatccaaataaaggataaaatacttcacattatgataaacatcatattcatcacctaacaatcatcgacat--ctttatataatcaaaacaaacta 76107  T
Q  276 tccacaaaagatttgccaagtaattggtcttaaaga 311  Q
    ||||||||||||||||||||||||||||||||||||    
T  76108 tccacaaaagatttgccaagtaattggtcttaaaga 76143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 176 - 268
Target Start/End: Original strand, 811 - 903
Alignment:
Q  176 tcacgatccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatat 268  Q
    |||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |  ||| |||||||||||| ||||||| ||||||    
T  811 tcacaatccaagtaaaggagaaaatacaacacattatgataaacatcatattcaacacatgtaaagcattcacatatcctcatttagtcatat 903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1204 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: scaffold1204
Description:

Target: scaffold1204; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 94 - 254
Target Start/End: Complemental strand, 1438 - 1276
Alignment:
Q  94 caccaacaatatcaccattaattaacatatatgcaagtaatcaacatcaacaatattat-tac--caacaattccatataatttttcacgatccaagtaa 190  Q
    ||||||||||||   ||| ||||||||||||||||| || ||||||||||| |||| || ||   |||||| |||||||| ||| |||| ||||||||||    
T  1438 caccaacaatattctcatcaattaacatatatgcaa-tattcaacatcaactatatcatatagttcaacaactccatatactttctcacaatccaagtaa 1340  T
Q  191 atgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatct 254  Q
    | ||| ||||||||||||  |||||||||||| |||||||||| || | | |||||| ||||||    
T  1339 aggagaaaatacaacacaccatgataaacatcgtattcaacacttagagagcattcatatatct 1276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1204; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 275 - 311
Target Start/End: Complemental strand, 1275 - 1239
Alignment:
Q  275 atccacaaaagatttgccaagtaattggtcttaaaga 311  Q
    ||||||||||||||||||||||| ||| |||||||||    
T  1275 atccacaaaagatttgccaagtatttgatcttaaaga 1239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 182 - 266
Target Start/End: Complemental strand, 44823 - 44739
Alignment:
Q  182 tccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcat 266  Q
    |||||||| | ||| ||||||||||| |||| |||||||||||||||||||||||  ||||||||| | ||||||||||||||||    
T  44823 tccaagtagaggagaaaatacaacaccttataataaacatcatattcaacacctatcaatcattcatagatcttcatttaatcat 44739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0452 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0452
Description:

Target: scaffold0452; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 214 - 311
Target Start/End: Complemental strand, 8634 - 8537
Alignment:
Q  214 ataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaacaatccacaaaagatttgccaagtaattggtcttaaaga 311  Q
    ||||||||| || ||||||| || | | |||||||||||||  || |||||||| ||||| |||||||||| |||||||||||| |||||||||||||    
T  8634 ataaacatcgtaatcaacacttagagagcattcacatatctctatataatcataacaaactatccacaaaatatttgccaagtatttggtcttaaaga 8537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0357 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0357
Description:

Target: scaffold0357; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 184 - 288
Target Start/End: Original strand, 6682 - 6787
Alignment:
Q  184 caagtaaatgaggaaa-tacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaacaatccacaa 282  Q
    |||||||| ||||||| |||||||| |||||||||| ||||||||||| |||| | ||| | ||||||||||||||| |||||||| |||| ||  ||||    
T  6682 caagtaaaagaggaaaatacaacaccttatgataaatatcatattcaagacctcacaattactcacatatcttcattcaatcatataaaactattgacaa 6781  T
Q  283 aagatt 288  Q
    ||||||    
T  6782 aagatt 6787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 156 - 268
Target Start/End: Complemental strand, 34703 - 34591
Alignment:
Q  156 caacaattccatataatttttcacgatccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaa-aaatcattcacatatct 254  Q
    |||||| |||||| | ||| ||||  |||||||||  ||| ||||||||||| ||||||||||| ||||||||||||||||| || ||||||  ||||||    
T  34703 caacaactccatacactttctcacattccaagtaag-gagaaaatacaacaccttatgataaacttcatattcaacacctaacaattcattcgtatatct 34605  T
Q  255 tcatttaatcatat 268  Q
    ||||||||||||||    
T  34604 tcatttaatcatat 34591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0561 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0561
Description:

Target: scaffold0561; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 182 - 268
Target Start/End: Complemental strand, 4049 - 3963
Alignment:
Q  182 tccaagtaaatgaggaaatacaacacattatgataaacatcatattcaacacctaa-aaatcattcacatatcttcatttaatcatat 268  Q
    |||||||||| |||||||||| |||| ||||||| ||||||||||||||||||||| || ||| ||| ||||||||||||||| ||||    
T  4049 tccaagtaaa-gaggaaataccacaccttatgatgaacatcatattcaacacctaacaagtcactcaaatatcttcatttaataatat 3963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 311
Target Start/End: Complemental strand, 39233 - 39134
Alignment:
Q  212 tgataaacatcatattcaacacctaaaaatcattcacatatcttcatttaatcatatcaaacaatccacaaaagatttgccaagtaattggtcttaaaga 311  Q
    ||||||||||||| |||||||||||  ||||||||| | ||||||||  ||||||||||||| || || ||||||||| | | ||| | |||||||||||    
T  39233 tgataaacatcatgttcaacacctattaatcattcatacatcttcatacaatcatatcaaactattcataaaagattttcaaggtattcggtcttaaaga 39134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 39518 - 39480
Alignment:
Q  44 catcatttgaatgtaataattcaacaacataattcatca 82  Q
    |||| |||| |||||||||||||||||||||||||||||    
T  39518 catcgtttgcatgtaataattcaacaacataattcatca 39480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 311
Target Start/End: Original strand, 9120 - 9213
Alignment:
Q  219 catcatattcaacacctaa-aaatcattcacatatcttcatttaatcatatcaaacaatccacaaaagatttgccaagtaattggtcttaaaga 311  Q
    ||||||||| ||||||||| |||||||| ||| |||||||| ||||| |||||| | || |||||||||||||| ||||| | ||| |||||||    
T  9120 catcatattaaacacctaacaaatcatttacacatcttcatataatcgtatcaagctatacacaaaagatttgcaaagtactcggttttaaaga 9213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 86
Target Start/End: Complemental strand, 17127 - 17095
Alignment:
Q  54 atgtaataattcaacaacataattcatcatcat 86  Q
    |||||||||||||||||||||||||||||||||    
T  17127 atgtaataattcaacaacataattcatcatcat 17095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0305 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0305
Description:

Target: scaffold0305; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 44 - 83
Target Start/End: Original strand, 1246 - 1285
Alignment:
Q  44 catcatttgaatgtaataattcaacaacataattcatcat 83  Q
    ||||||||  ||||||||||||||||||||||||||||||    
T  1246 catcatttacatgtaataattcaacaacataattcatcat 1285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 3641 - 3703
Alignment:
Q  197 aaatacaacacattatgataaacatcatattcaacacctaaaaatcattcacatatcttcatt 259  Q
    ||||||||||| |||||||||| ||||||| |||||  ||| | ||||||||| |||||||||    
T  3641 aaatacaacaccttatgataaatatcatatccaacatataacattcattcacacatcttcatt 3703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0165 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0165
Description:

Target: scaffold0165; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 266
Target Start/End: Original strand, 20996 - 21054
Alignment:
Q  209 ttatgataaacatcatattcaacacctaaaaa-tcattcacatatcttcatttaatcat 266  Q
    ||||||| |||||||||| |||||| |||||| ||| ||||||| ||||||||||||||    
T  20996 ttatgatgaacatcatatccaacacataaaaagtcactcacataacttcatttaatcat 21054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 86
Target Start/End: Complemental strand, 34392 - 34350
Alignment:
Q  44 catcatttgaatgtaataattcaacaacataattcatcatcat 86  Q
    ||||||||| | ||||||||||||||| |||||||||||||||    
T  34392 catcatttgcacgtaataattcaacaatataattcatcatcat 34350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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