View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4791_high_1 (Length: 622)
Name: NF4791_high_1
Description: NF4791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4791_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 2e-91; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 331 - 615
Target Start/End: Original strand, 25494062 - 25494346
Alignment:
| Q |
331 |
atggtgtatttaatgttgggttcaatgaagtggttattgaacttcagttaaggacaaactactcgagagaatttgagtttgatttttggctgagcaaact |
430 |
Q |
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| T |
25494062 |
atggtgtatttaatattgggttcaa----gtgattattgaccttcagttaaggacgaactactcgagaggatttgagtttgaattttggttaagcaaact |
25494157 |
T |
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| Q |
431 |
ttatttatctctgatcaaacgccagattac----gtctcttttctttaaaattaaaagattaagacaaaaaatgacaatttttgggaattctaacatttt |
526 |
Q |
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| T |
25494158 |
ttatttgtgtccgatcaaatttcggattatcagagtctcttttctctaaaactaaaggattaagacaaaaaatgacaatttttgggaattctaacatttt |
25494257 |
T |
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| Q |
527 |
ttgttgtgaatattcaggttcagtgtagattttggcaagaatgaggtagaggttatgaagcatgtgtcaatctacttagattcatctca |
615 |
Q |
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| T |
25494258 |
ttgttatgaatattcaggttcagtgtagattttggcaagaatgaggtagaagttatgaagcatgtgtcaatctacttagattcatctca |
25494346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 17 - 191
Target Start/End: Original strand, 25493388 - 25493560
Alignment:
| Q |
17 |
ttattctcctcgagacattgactctgaattaatggctgcaactctcgtaatttccttagaaatggtggcatttcgatagattttaatgcaaaggctgcat |
116 |
Q |
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| T |
25493388 |
ttattctcctcgagacattgactctgaattaatggatgcaactcgc--agtttccttagaaatggtggcatttcgatagattttaatgcaaaggttgcac |
25493485 |
T |
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| Q |
117 |
atgccagtaagatcctgaaatggtaagttctatgaaattcaagtatgattgatgtcctttttggtaaatttaaac |
191 |
Q |
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| T |
25493486 |
ataccagtaagatcctgaaatggtaagttctatgagattctaatatgattgatgttcttttaggtagatttaaac |
25493560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 540 - 615
Target Start/End: Complemental strand, 28225970 - 28225895
Alignment:
| Q |
540 |
tcaggttcagtgtagattttggcaagaatgaggtagaggttatgaagcatgtgtcaatctacttagattcatctca |
615 |
Q |
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| T |
28225970 |
tcaggttcagtgtagattttggcaagaatgaggtagaggttatgaagcatgtgtcaatctacttagattcatctca |
28225895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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