View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4791_low_3 (Length: 306)
Name: NF4791_low_3
Description: NF4791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4791_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 77 - 295
Target Start/End: Complemental strand, 5921846 - 5921628
Alignment:
| Q |
77 |
cattgattcttcttcaccatggctcctcgtaatcaaggtcctgatcaagaatctccattttacgtgcatccaagtgaaggtccttcatctttaatcgttt |
176 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||| |
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| T |
5921846 |
cattgattcttcttcaccatggctcctcgtaatcaaggtcctgatcaagaatctccatttcacgtgaatccaagtgaaggtccttcatctttaattgttt |
5921747 |
T |
|
| Q |
177 |
ctcctaagcttgatggttccagttatctagcttggaatcgttccatgaagcgttctctaggcacgaagaacaagcttggattcaccaatggctccattga |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
5921746 |
ctcctaagcttgatggttccagttatctagcttggaatcgttccatgaagcgttctctaggcacgaagaacaagcttggattcatcaatggctccattga |
5921647 |
T |
|
| Q |
277 |
acaacctgatcttgatgat |
295 |
Q |
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|||||| ||||||||||| |
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| T |
5921646 |
acaacccaatcttgatgat |
5921628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 143 - 274
Target Start/End: Original strand, 26967837 - 26967968
Alignment:
| Q |
143 |
catccaagtgaaggtccttcatctttaatcgtttctcctaagcttgatggttccagttatctagcttggaatcgttccatgaagcgttctctaggcacga |
242 |
Q |
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||||| |||||||||||||| || | || |||||||| || ||||||||||||| ||| | | ||||||| ||||||||||||||| | || || | |
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| T |
26967837 |
catccgagtgaaggtccttcttccctcattgtttctcccaaacttgatggttccaactatgtggtgtggaatcattccatgaagcgttcattgggaacaa |
26967936 |
T |
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| Q |
243 |
agaacaagcttggattcaccaatggctccatt |
274 |
Q |
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| T |
26967937 |
agaacaaacttgaattcaacaacggatccatt |
26967968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 80 - 295
Target Start/End: Complemental strand, 20326145 - 20325930
Alignment:
| Q |
80 |
tgattcttcttcaccatggctcctcgtaatcaaggtcctgatcaagaatctccattttacgtgcatccaagtgaaggtccttcatctttaatcgtttctc |
179 |
Q |
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| T |
20326145 |
tgattcttcttcaccatgcctcctcgtaatcaaggtcctgatcaagaatctcctttttacgttcatccaagtgaaggtccttcatcgttaatcgtttctc |
20326046 |
T |
|
| Q |
180 |
ctaagcttgatggttccagttatctagcttggaatcgttccatgaagcgttctctaggcacgaagaacaagcttggattcaccaatggctccattgaaca |
279 |
Q |
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|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || | ||||||||| |||||||| |
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| T |
20326045 |
ctaaacttgatggttccaattatctagcttggaatcgttccatgaagcgttctctaggcacaaagaacaagcttggttttatcaatggctcaattgaaca |
20325946 |
T |
|
| Q |
280 |
acctgatcttgatgat |
295 |
Q |
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|||||||||||||||| |
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| T |
20325945 |
acctgatcttgatgat |
20325930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 274
Target Start/End: Complemental strand, 34503900 - 34503835
Alignment:
| Q |
209 |
tggaatcgttccatgaagcgttctctaggcacgaagaacaagcttggattcaccaatggctccatt |
274 |
Q |
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||||||| ||||||||||||| || || | ||||||||||| ||||||||| |||||| |||||| |
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| T |
34503900 |
tggaatcattccatgaagcgtgctttaagaacgaagaacaaaattggattcatcaatggttccatt |
34503835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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