View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4791_low_4 (Length: 245)
Name: NF4791_low_4
Description: NF4791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4791_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 5921578 - 5921336
Alignment:
| Q |
1 |
tcatcaatttcgtttcagattctattgctcaaattgttgtcttctttgtcattgcatatgaggtatggcaagatctccatgaaagtttctctaaggttga |
100 |
Q |
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| T |
5921578 |
tcatcaattccgtttcaaattctattgctcaaactgttgtcttctatgtcattgcttatgaggtatggcaagatctccatgaacgtatctctaaggttga |
5921479 |
T |
|
| Q |
101 |
tcgcattcgtattacaaatttgcgttcttctattaacaatttgaaacaaggtgcaaaatatgttcttgagtattttactgaattgaaagcgttatgggaa |
200 |
Q |
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| T |
5921478 |
tcgcatttgtattgcaaatttgcgttcttctattaacaatttgaaacaaggtgcaaaatatgttcttgagtattttactgaattgaaagcgttatgggaa |
5921379 |
T |
|
| Q |
201 |
gaactttcaccacatagaccaattccatcttgtatctgtgttc |
243 |
Q |
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| T |
5921378 |
gaactttcatcacatagaccaattccatcttgtatttgtgttc |
5921336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 149; Significance: 8e-79; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 3 - 243
Target Start/End: Complemental strand, 20325878 - 20325638
Alignment:
| Q |
3 |
atcaatttcgtttcagattctattgctcaaattgttgtcttctttgtcattgcatatgaggtatggcaagatctccatgaaagtttctctaaggttgatc |
102 |
Q |
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| T |
20325878 |
atcaattctgtttcagattctattgctcaaactgttgtcttttatgacactgcttatgaggtatggcaagatcttcatgaacgtttttctaaggctgatc |
20325779 |
T |
|
| Q |
103 |
gcattcgtattacaaatttgcgttcttctattaacaatttgaaacaaggtgcaaaatatgttcttgagtattttactgaattgaaagcgttatgggaaga |
202 |
Q |
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| T |
20325778 |
gtattcgtattgcaaatttgcgttcttccattaacaacttgaaacaaggtgcaaaatctgttcttgagtattttactgaattgaaatctttatgggaaga |
20325679 |
T |
|
| Q |
203 |
actttcaccacatagaccaattccatcttgtatctgtgttc |
243 |
Q |
| |
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| T |
20325678 |
actttcatcacatagacctattccatcttgtgtgtgtgttc |
20325638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 59 - 206
Target Start/End: Original strand, 15447253 - 15447400
Alignment:
| Q |
59 |
tgaggtatggcaagatctccatgaaagtttctctaaggttgatcgcattcgtattacaaatttgcgttcttctattaacaatttgaaacaaggtgcaaaa |
158 |
Q |
| |
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| T |
15447253 |
tgaggtttggcaagatcttaaggagcgtttttcaaaagttgatcgtattagaattgaaaatttacgttcctccattaacaatctcaaacaaggttcaata |
15447352 |
T |
|
| Q |
159 |
tatgttcttgagtattttactgaattgaaagcgttatgggaagaactt |
206 |
Q |
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| |||| | |||||||| ||||| |||||||| ||||||||||||||| |
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| T |
15447353 |
tttgttttggagtatttcactgagttgaaagctttatgggaagaactt |
15447400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 26470445 - 26470493
Alignment:
| Q |
121 |
tgcgttcttctattaacaatttgaaacaaggtgcaaaatatgttcttga |
169 |
Q |
| |
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| T |
26470445 |
tgcgttcttccattaacaatctgaaacaaggtgataaatctgttcttga |
26470493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 207
Target Start/End: Complemental strand, 34893243 - 34893126
Alignment:
| Q |
90 |
tctaaggttgatcgcattcgtattacaaatttgcgttcttctattaacaatttgaaacaaggtgcaaaatatgttcttgagtattttactgaattgaaag |
189 |
Q |
| |
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||||| |||||||| ||||| ||| ||||| | ||||| || |||||||| | || |||||| | |||| ||| | |||||||||||||||||||||| |
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| T |
34893243 |
tctaaagttgatcgtattcgcattgcaaatctacgttcctccattaacaacctcaagcaaggttccaaatctgtcttagagtattttactgaattgaaag |
34893144 |
T |
|
| Q |
190 |
cgttatgggaagaacttt |
207 |
Q |
| |
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| | ||||||||||||| |
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| T |
34893143 |
ctctttgggaagaacttt |
34893126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 13129139 - 13129185
Alignment:
| Q |
123 |
cgttcttctattaacaatttgaaacaaggtgcaaaatatgttcttga |
169 |
Q |
| |
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| T |
13129139 |
cgttcttccattaacaatttgaaacaaggtgataaatctgttcttga |
13129185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 159
Target Start/End: Complemental strand, 49728251 - 49728189
Alignment:
| Q |
97 |
ttgatcgcattcgtattacaaatttgcgttcttctattaacaatttgaaacaaggtgcaaaat |
159 |
Q |
| |
|
||||||||||||| ||| ||||| |||||||||| || |||||| | ||||| |||||||||| |
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|
| T |
49728251 |
ttgatcgcattcgcattgcaaatatgcgttcttcaatcaacaatctcaaacagggtgcaaaat |
49728189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 203
Target Start/End: Original strand, 25226927 - 25227044
Alignment:
| Q |
87 |
ttctctaaggttgatcgcattcgta-ttacaaatttgcgttcttctattaacaatttgaaacaaggtgcaaaatatgttcttgagtattttactgaattg |
185 |
Q |
| |
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||||||||| |||||||| || | | || ||||| |||||||||| |||||||| | | ||||||| | |||||||| | |||||||| | |||| || |
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| T |
25226927 |
ttctctaagattgatcgccttagaaattgcaaatatgcgttcttcctttaacaatcttagacaaggtaccaaatatgtgttagagtatttcattgaaatg |
25227026 |
T |
|
| Q |
186 |
aaagcgttatgggaagaa |
203 |
Q |
| |
|
||||| |||||||||||| |
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| T |
25227027 |
aaagctttatgggaagaa |
25227044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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