View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4791_low_5 (Length: 240)
Name: NF4791_low_5
Description: NF4791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4791_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 92; Significance: 8e-45; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 137 - 228
Target Start/End: Original strand, 42751314 - 42751405
Alignment:
| Q |
137 |
gatggtgatgactctggactatggaggcagcaccaaatctgctatctctaattgaaaaggacttaaattagttttctcataaccaggaacaa |
228 |
Q |
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| T |
42751314 |
gatggtgatgactctggactatggaggcagcaccaaatctgctatctctaattgaaaaggacttaaattagttttctcataaccaggaacaa |
42751405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 128 - 239
Target Start/End: Original strand, 42874957 - 42875068
Alignment:
| Q |
128 |
tattcagttgatggtgatgactctggactatggaggcagcaccaaatctgctatctctaattgaaaaggacttaaattagttttctcataaccaggaaca |
227 |
Q |
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| T |
42874957 |
tattcagttgattgtgatggctctggactcttgaggcagcaataaatctgatatctctagttgaaaaggacttatatcagctttctcataaccaggaaca |
42875056 |
T |
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| Q |
228 |
acctcaaatttc |
239 |
Q |
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| T |
42875057 |
gcctcaaatttc |
42875068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 21 - 123
Target Start/End: Original strand, 42874822 - 42874926
Alignment:
| Q |
21 |
taaataaaactcagcaataaagaacaattgtattattcaagacataaaacatg-tgtctctcctcctaaaaaactaatc-acctaataatctaagaaatt |
118 |
Q |
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| T |
42874822 |
taaataaaactcaacaataaagaacaattgtattattcaaaacttgaaacatgttgttttccctcctaaaaaactaagcaaactaataaactatgaaatt |
42874921 |
T |
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| Q |
119 |
aaaaa |
123 |
Q |
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| T |
42874922 |
aaaaa |
42874926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 161 - 236
Target Start/End: Original strand, 1049493 - 1049568
Alignment:
| Q |
161 |
aggcagcaccaaatctgctatctctaattgaaaaggacttaaattagttttctcataaccaggaacaacctcaaat |
236 |
Q |
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| T |
1049493 |
aggcaacaacaaatctgctatctctaactgaaaagggcttatatcaattttctcataaccaggaacaacttcaaat |
1049568 |
T |
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